barSeed - Barley Seed Development Database

Probe CUST_33902_PI390587928

Source Contig U35_25475

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33902_PI390587928	Hv_44K_v2	TACTACAAGCAAAAGAAGCCCCACCGCGCCGAGGAGATGTGGCGCGAGATGGTTGAAGAA	538	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	1.054	2.276	1.895	0.672	0.644
Raw	59.800	98.721	192.908	250.093	33.021	33.046

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58033.1	1884	2e-24	1229 - 1288	100	60 / 60	minus	None
MLOC	MLOC_58033.3	2152	2e-24	1455 - 1514	100	60 / 60	minus	ABC35446
JLOC1	JLOC1_37676.1	1558	8e-25	857 - 916	100	60 / 60	minus
JLOC1	JLOC1_37675.1	1675	8e-25	643 - 702	100	60 / 60	plus
Harvest35	U35_25475	624	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_25475 624 Hv_44K_v2
AAAACTTTCCCCCACTCGTCCTAAACCCTAACCCCGAAACCTCGGATCGATCAGACACAG
CTCCGCCGCAGCAATGGCCGCCATCTTCTCTGCCTCCGGCCGCCGCCTGCTCTCAAACGC
CGCTGCTTCTGCCGAGTTCCCCGTCCCGATGGCCCGCATCCGCAGCCTCGCCCGCGCGGG
CCGCCTCGCCGACATCGACGCCGCCGTCGCGCCGCTCGTAGCGACCAACACGAAAGCCGT
GATCTCCGCCCTCTCCGTGGTCGGCCTCTCCGACCGGGCCTCGTCCATCCTCTCCACCAT
CCCGTCGCCCACCGCCGAGCATCTCAACGCCCTCCTGGGCCCGCTCCTCCGCCGCCGCCG
CCTCGCCGAGCTCGTGCCTGCTCTGCTGGACGCACACCCCTCCGCGCCGCGCGACGCCTT
TACGTGGTCCATCCTCGCCAAGTCCCTCTGCATCACCAAAGGTGCTGACCACGCGGTGTA
CCTCCTCCACGGGGAGGAGCCACCTTCCCTCCACCTCTACACGGCCATCATCGACTCCTA
CTACAAGCAAAAGAAGCCCCACCGCGCCGAGGAGATGTGGCGCGAGATGGTTGAAGAACG
CGGCATCGCGCCCGACGCTGCCGC

Homology of Contig U35_25475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g42990.1	650	9e-52	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g43617.1	363	9e-68
Arabidopsis v10	None