barSeed - Barley Seed Development Database

Probe CUST_33901_PI390587928

Source Contig U35_25476

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33901_PI390587928	Hv_44K_v2	ATTAGCTCCTGCTGATCCGAGCAAAGATCCGTCCATGGAGGCCGAGTCGAGAAAGCTCCT	47	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355954	1959	2e-24	81 - 140	100	60 / 60	plus	ABC16109
MLOC	MLOC_13443.1	828	2e-24	406 - 465	100	60 / 60	minus	None
JLOC1	JLOC1_9102.1	764	8e-25	304 - 363	100	60 / 60	plus
Harvest21	ABC47035	435	3e-25	25 - 84	100	60 / 60	plus
Harvest35	U35_25476	458	3e-25	48 - 107	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_25476 458 Hv_44K_v2
GCTCCCCTCTCCCTCCTCTCGCTTTCCGGTCCCTGGCTGACACACACATTAGCTCCTGCT
GATCCGAGCAAAGATCCGTCCATGGAGGCCGAGTCGAGAAAGCTCCTCCTGCTCTGCCTC
TGCTGCTTCGTCTTCCTCGCCACATCGGGCGCGCAGCCGCACATCGGCGTCAACTACGGC
GAGGTGGCGGACAACCTGCCGCCGCCGGACGCGACGGCGAAGCTGCTCAAGTCCACCGCC
ATCACCAAGGTCCGCCTCTACGGCGTCGACGCGGGTCTCATCCGCGCGCTGGCCGGCACG
GGCGTCTCCCTCGTGCTCGGCGTGGCCAACGGCGACATCCCCGCCATCGCCGCCGACCCC
AACGCCGCCTCCGGCTGGCTGGCCGCCAACGTGCTGCCGTTCGTCCCGGCCTCGTCCATC
TCCGTCGTCGCCGTCGGCAACGAGGTGCTCGAGTCCGG

Homology of Contig U35_25476 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None