barSeed - Barley Seed Development Database

Probe CUST_338_PI415269222

Source Contig TA30438_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_338_PI415269222	Hv_44K_v2	CGCTCAATTCGTGTGTAATAGTATATGCCTCATCTTGTTCCGTTCTTCATGTGATTGCTA	1188	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26335.1	798	2e-24	13 - 72	100	60 / 60	minus	ABC02669 ABC02670 ABC02673 ABC40934
JLOC1	JLOC1_17888.1	934	8e-25	728 - 787	100	60 / 60	plus

Contig Sequence (1308 bp)

>TA30438_4513 1308 Hv_44K_v2
CCGGACTCACACAACACAAGCTCCCTTCCAGCTTTTCATCCTTCTCATCAACTTATTTGT
CTTGTGACTTGTGCGTTGCTTCTGTTAAGCTAGCTAGTTGAGTGAGGTTACTTTCTGGGA
GCATGGCTCGCATGGCGGTGTCGGTGCTGGCGATCCTGCTCGCCTGGTGCGCCCTGGCGG
CGGCGAGCTTCGACAAGGAGTTCGACATCACCTGGGGCGACGGGCGTGGCAAGATCCTGA
ACAATGGTCAGCTCCTGACGCTGGCGCTGGACAAGGTGTCCGGCTCCGGGTTCCAGTCCA
AGCACGAGTACCTCTTCGGCAAGATCGACATGCAGCTCAAGCTCGTCCCCGGCAACTCTG
CCGGCACCGTCACCGCATACTACCTGTCGTCGCAGGGGCCGACGCACGACGAGATCGACT
TCGAGTTCCTGGGCAACGTCACCGGCGAGCCCTACACGCTGCACACCAACGTGTTCACGC
AGGGGCAAGGCCAACGGGAGCAGCAGTTTCGCCTCTGGTTCGATCCCACCAACGATTTCC
ACACCTACTCCATCCTCTGGAACCCAAAGCACATCATCTTCATGGTGGACGACATGCCGA
TCAGAGACTTCAAGAACCTGGAGGGAAAAGGGATCGCCTTCCCCAAGAACCAGCCCATGC
GGCTCTACTCCAGCCTCTGGAACGCCGACGACTGGGCAACGCAGGGCGGCCGCGTCAAGA
CGGACTGGTCCCACGCCCCGTTCTCGGCCTCCTATCGCGGCTTCAAGGCAGACGCGTGCG
TGGTGACCGCGGGCGGGCGGCCTCACTGCGGCGCCAGCGTCGGCACGGACGTCGCGCCCG
GCACAGGCGCGGCCGGCGAGTGGTACAACCAGGAGCTGGACCTGACGCGGCAGCAGCGGA
TGCGGTGGGTACAGAGCAACTACATGATCTACAACTACTGCACCGACCCCAAGAGGTTCG
CTCAGGGCGTCCCCGCCGAGTGCTCCATGTAGTGCCCTTGTCCGTCCGTCCGTCCAGCAA
GCTAGCATTGGACAGCCCGTGTATACGTCGATCGCCGGAGGAAGATGACCGGAGATAGGG
AAGATGGAAGCGTCTGTACTGTATGATAAATAAGTACTGGTGTGGGGGATAAGGTGAAAT
GTAGCCGGTGGTAGATTCTTCTGTTGCTCTTTGTCACGATCACGCTCACGCTCAATTCGT
GTGTAATAGTATATGCCTCATCTTGTTCCGTTCTTCATGTGATTGCTACTCTCTGTTCCA
CTTTGCAATTGCAACGGCTTGTTGGTTGGATTATTATTCGTTCGTGGT

Homology of Contig TA30438_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48200.1	291	0.0	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33840.1	294	0.0
Arabidopsis v10	AT5G57550.1	284	5e-142	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284