barSeed - Barley Seed Development Database

Probe CUST_338_PI390587928

Source Contig U35_20037

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_338_PI390587928	Hv_44K_v2	GTTATTCATCAATCTTTTGATCCAATCATCGAAGCCATACTGGTAGGGATCTAATTCCTG	1256	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365269	4089	7e-23	3057 - 3117	98	60 / 61	plus	ABC21329
MLOC	MLOC_36594.5	3401	7e-23	2499 - 2559	98	60 / 61	plus	ABC21329
MLOC	MLOC_36594.6	3401	7e-23	2499 - 2559	98	60 / 61	plus	ABC21329
MLOC	MLOC_36594.3	3538	7e-23	2498 - 2558	98	60 / 61	plus	ABC21329
MLOC	MLOC_36594.7	3644	7e-23	2574 - 2634	98	60 / 61	plus	ABC21329
MLOC	MLOC_36594.1	3342	7e-23	2417 - 2477	98	60 / 61	plus	ABC21329
MLOC	MLOC_36594.2	3342	7e-23	2417 - 2477	98	60 / 61	plus	ABC21329
JLOC1	JLOC1_23583.1	3496	4e-23	2416 - 2476	98	60 / 61	plus
Harvest21	ABC11851	1316	3e-25	1257 - 1316	100	60 / 60	plus
Harvest35	U35_20037	1316	3e-25	1257 - 1316	100	60 / 60	plus

Contig Sequence (1316 bp)

>U35_20037 1316 Hv_44K_v2
GGTACATCTACTTAGCGAATGGTAATCGTTTGCGGGATGTGCTGCGTGCCTGTGAAAGTT
CTCCTTTGGATTCTCTAGATAAAACAATCCAGTCCTGCATTGATCCCATGCTTATAAGGA
CCCGCATGAATTGTCTGAACTGCAATGGTGAGCTACCTTCACAAACTGAAGAACAGTTTC
TGTGCCATGACTGTTGCCCAGAGTCAAACCAACCTCAAGATCCTACTTCCCCATTGGCAT
GCAGCAAGAGCAGTTCCAGTCTGACTCCAAGTTCCAAGGAATCCTTGTTGAAGAGGATGT
CGGCAAGCAAAGGCGCGAGTACTGGAAAAGTAACAACAAAGGATACGGGGCTACACAAAC
TGGTATTCAAGGTTTTGCTTGATGGTACTGAAGTAAACTACTATGTTGACGGGCAGAAAA
AGATCGATGGGTACATCAAGGATCAAAGAATCTACTGTAACCATTGCAACAAAGTGGTCA
GTCCCTCAGCATTCGAAGCTCATGCGGGTGAGGGATCAAGACGCAAACCGTATGATAACA
TCTTCACATCAAATGGGGTGTCCCTGCATGAGCTGTCAATGAGCATATCAAAAGACATGC
AATTGTCGGAACGTGAAACTGATGATCTGTGCAGAGAATGTGGTCTAGGAGGGGATATTT
TCCCTTGCAGAATGTGTCCAAGGTCATTTCACCCAGCTTGCGTTGGGCTGCCTGTAGTTC
CCTCGGAGGAGTGGTTTTGTGATAACTGTACCATCCTCGTTCAAAAAGAAAAGGCTTTAG
CAGCAAATAAGAATGCCAAGGCTGCTGGAAGGCAGGCTGGAGTCGATTCTATTGAGCAGA
TTTTGAAGAGAGCTATTAGAATCGTCCCAATCTGTGATGACCTTGGAGGATGCGCCTTAT
GCAAGAAAAAGGATTTTAACAATGCAGTATTTGATGAGCGCACTGTGATACTCTGTGATC
AATGCGAGAAAGAATACCATGTAGGATGTTTGAGGAGTGAATGGCAGGTCGACCTGAAGG
AATTACCAGAAGGGGAGTGGTTCTGTTGTGATAGTTGCTCTGAGATACGCTCCTCTTTGG
ACAAGATGATTTCTGAAGGAGCTCAGCCTTTGTCGGAGTCGGACGTTGATATCATAAGAA
AGAAACACGAGTCAAAAGGTTTGGTCATGGACGCCAATACAGAGATCAGATGGCAATTGG
TTGCTGGTAGAAGTGCCACTGAAGATGGCAACTCACTGCTTTCATCTGCTGTCCCAGTTA
TTCATCAATCTTTTGATCCAATCATCGAAGCCATACTGGTAGGGATCTAATTCCTG

Homology of Contig U35_20037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01170.1	1026	0.0	protein\|PHD-finger domain containing protein, expressed
Brachypodium v1_2	Bradi1g52407.1	1173	0.0
Arabidopsis v10	AT2G27980.1	1072	6e-98	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain \| chr2:11913950-11919741 REVERSE LENGTH=1072