barSeed - Barley Seed Development Database

Probe CUST_33896_PI390587928

Source Contig U35_37451

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33896_PI390587928	Hv_44K_v2	GAACACTTTCCATATGCCGACTAGATTATTGCATTGGAGAAGGACATCATTGATAAAAAA	11	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.903	5.424	1.384	0.642	0.360	0.336
Raw	111.529	174.179	36.441	28.336	3.617	4.366

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21100.2	436	2e-24	270 - 329	100	60 / 60	plus	None
JLOC1	JLOC1_14639.1	715	8e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_37451	610	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_8794	742	3e-25	645 - 704	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_37451 610 Hv_44K_v2
TTTTTTTTTTTTTTTTTATCAATGATGTCCTTCTCCAATGCAATAATCTAGTCGGCATAT
GGAAAGTGTTCCTTGTTTTTCTATCACATCCCCATCATACAAGAATGGCTTTTTGGAGAA
GATAAGGTGCATATATGTGGATACAAATTGCTGCAGTTTTACTTGAGCACATACTTGAGG
ACACCCGGTATGTGGATCTTGTAGAAGTAGTCGTTCCAGTCGACGGTCTTGGGATCGAAA
TTGAACATGTCGTCCTCCGGGCTTGTCTTGGTCACGGTCAGTCGGAGCCGCTCCAAGTTG
ATGTCGTCGAAGCATCCTTTGAATAAGGCGAAGGGCCCGTAGACGTCGACGAGATGCATG
ACGAACTTGTATTTCCGGGTGAGGTCGTCGTAAAGGTGCGAGAAGAGGCCGCAGAGGAGC
AGGTTCACCACGTGCAGGATCTCAAGTGGCAGCTTGTACTTGATGAGCATGTAGAGATGG
AAGCTGGCGATGGTCTTGAAGAAGTGCATCTCCTTGGTGGGGATGACCTGGCCGTCCTTG
CTCAGCCTGNGGTTCTGGTANAAGTGGCGGCGGCCGGACTCGTANAGCACGCCGTANGGG
GCCGGGTTGC

Homology of Contig U35_37451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44360.1	510	9e-77	protein\|male sterility protein 2, putative, expressed
Brachypodium v1_2	Bradi3g42780.1	511	9e-91
Arabidopsis v10	None