barSeed - Barley Seed Development Database

Probe CUST_33895_PI390587928

Source Contig U35_37452

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33895_PI390587928	Hv_44K_v2	TGGTTTTGTGAAATCGGACGTGAAGAAGAAGAAGACCCTGCCGGAGTGCGGTGGACGGAC	84	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62710.1	959	2e-24	748 - 807	100	60 / 60	plus	None
MLOC	MLOC_62710.2	1477	2e-24	1003 - 1062	100	60 / 60	plus	None
JLOC1	JLOC1_41059.2	927	8e-25	685 - 744	100	60 / 60	plus
JLOC1	JLOC1_41059.1	1275	8e-25	980 - 1039	100	60 / 60	plus
Harvest35	U35_37452	313	3e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_25749	439	3e-25	210 - 269	100	60 / 60	plus

Contig Sequence (313 bp)

>U35_37452 313 Hv_44K_v2
CGAGAACGCGCGCTTCTGACGACGGCGACGGCGAGGAACGACGATCGACGGAGCTCCATG
ATCTTTGTTTTGTTTTTTTTGGTTTGGTTTTGTGAAATCGGACGTGAAGAAGAAGAAGAC
CCTGCCGGAGTGCGGTGGACGGACGGACGGCTAGAGGTGCTGCTGTCTTTTTTTTTGTTA
AAAAAAAGAGTAGCAAGTGAAATACTAGGGGGGGGCATGATATTGCTCCCCTTTTTTCCT
TTCATTTCCTTTCCTTCTTGTTAATTAATTAATTATAAGACTAAAAAAAATAATGCTAAA
AAAAAAAAACCGG

Homology of Contig U35_37452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None