barSeed - Barley Seed Development Database

Probe CUST_33891_PI390587928

Source Contig U35_37456

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33891_PI390587928	Hv_44K_v2	TTCTTAAAGAACAGACGCAAGTGTTTTGTCTTGCATGTCATGTGCTTGGCAACAGGCACC	127	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.654	1.258	1.189	0.837	0.372	0.228
Raw	45.149	45.897	43.829	49.983	6.973	2.695

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26234.1	1253	2e-24	714 - 773	100	60 / 60	minus	None
Harvest35	U35_37456	634	3e-25	128 - 187	100	60 / 60	minus

Contig Sequence (634 bp)

>U35_37456 634 Hv_44K_v2
CTTTTTTTTTTTTTTTCCTGATGTCAACTCTATGCCAAGGTTTAATTTTTCTTTTTCTTT
TAAAGTTCTGCTTGTAGCTGTCAATACATGTATGTTTTTCAGTTTTTCGTAGGGGGGAGG
TTTGGATGGTGCCTGTTGCCAAGCACATGACATGCAAGACAAAACACTTGCGTCTGTTCT
TTAAGAAGATTTTATCAATATGTATTTTGGAATTGAGAGATCAATAATATAACAAACCTG
AATGCCTGATGAGCAAGCTCTAGGCAACACGAACCAAAGATACCACGAGGCCAGTTCTTG
TTTGGCGAGGAACAAGTTCATTGTTGTGTTTGAGAAGATTCGGGCGGTGGTTGCTGCAAG
TTTTCTTTGTGCTGATTGGGTTGTTGGCTAGCAGAACTTGCTTGGTGATATGGCCTTGCT
CTTGAAAAGTTTCTACTCCCCCCGATCCAAATTAATTGACACTGCCTTAGTTCAACTTTT
AGTACAAAGTTGTACTAACGCAGCGTCAATTAATATGGATCGGAGGGAGTACTTTTGTTT
GTGTTGATTGGCATTTTGTTCATCTTCTTCTGTAATGCAGGTGTTACAATACTGATCTGA
ATTAGGCAGGGGGTTATGTGGTACCGCATGAGTG

Homology of Contig U35_37456 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None