barSeed - Barley Seed Development Database

Probe CUST_3388_PI390587928

Source Contig U35_35820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3388_PI390587928	Hv_44K_v2	CACGATGAACCTATTGTCAGTTGAAGATCCAGATAAAATTGGTGAACTACACCAGACTTC	323	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.032	1.703	1.157	1.037	0.364	0.325
Raw	43.115	99.655	67.362	97.981	11.974	11.058

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60167.1	2037	7e-23	1314 - 1373	98	59 / 60	plus	None
MLOC	MLOC_60167.3	1285	7e-23	1095 - 1154	98	59 / 60	plus	None
MLOC	MLOC_60167.2	2040	7e-23	1317 - 1376	98	59 / 60	plus	None
JLOC1	JLOC1_39213.2	1745	4e-23	1022 - 1081	98	59 / 60	plus
JLOC1	JLOC1_39213.1	1742	4e-23	1019 - 1078	98	59 / 60	plus
Harvest35	U35_35820	457	3e-25	324 - 383	100	60 / 60	plus

Contig Sequence (457 bp)

>U35_35820 457 Hv_44K_v2
GGCGAATTGGGCTTCTAGAAGATGCTCGAGCGGCCGCTCTACCAGATTCTTTTAAACATT
CAGTCTATTCAAGACAGAGTCTGTAGTCTGAGATCAGATCTCAAGAAAGCAATGGCCAAG
AAGAGCAAGGGGCTTGTCCTTAAAGTCAACACACGTGTCAATGGCGCACAGAGCTCTAAT
TGCTCACATGGAAAAGGCAAAGTTGCTGAAATGCCTGAAATATTACCTCAAGATGCATCA
GATTGTGATATGGACGATACGGACATGCCCGATAGTGCTGTCTCAAGCTATGGAGAAGCT
AACAATATGGATATTTTTGAGAGCACGATGAACCTATTGTCAGTTGAAGATCCAGATAAA
ATTGGTGAACTACACCAGACTTCGGAAGATGTGTTGATCGACAACCAACCAGCAGAGGGA
GGGTATCAAAATTTCGAGGTGATCAATCATCCATGCC

Homology of Contig U35_35820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g30340.2	463	8e-51	protein\|expressed protein
Brachypodium v1_2	Bradi2g27790.2	469	8e-57
Arabidopsis v10	None