barSeed - Barley Seed Development Database

Probe CUST_33886_PI390587928

Source Contig U35_49437

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33886_PI390587928	Hv_44K_v2	GAGCTGCCATTCTGGTAATAGATATGTACTACTTGGCTACATTGTAGTTTAATATTTTGC	382	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.541	0.431	0.732	2.079	1.609	1.490
Raw	86.442	101.977	162.547	702.443	194.230	197.793

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65780.2	2175	2e-24	1976 - 2035	100	60 / 60	plus	ABC10888 ABC38207
JLOC1	JLOC1_43304.3	1407	8e-25	1173 - 1232	100	60 / 60	plus
JLOC1	JLOC1_43304.2	1596	8e-25	1379 - 1438	100	60 / 60	plus
JLOC1	JLOC1_43304.1	1502	8e-25	1268 - 1327	100	60 / 60	plus
Harvest21	ABC51151	526	3e-25	383 - 442	100	60 / 60	plus
Harvest21	ABC10888	1267	3e-25	1069 - 1128	100	60 / 60	plus	ABC10888
Harvest21	ABC38207	491	6e-22	88 - 147	97	58 / 60	minus	ABC38207
Harvest35	U35_49437	526	3e-25	383 - 442	100	60 / 60	plus
Harvest35	U35_4647	1267	3e-25	1069 - 1128	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_49437 526 Hv_44K_v2
CAAACGAATACTCCCTCTGTCCGGAATATTTGTCACAAGAACAGATGTATCTAGATGTAT
TTTAGTTTTAAATACATCATTTTGTATCCATTTATGCGACAAGTAATTCCGAATTGAAAG
GAGTACACGACCATAATGTGAGGAATAATATCAGCTCTGTGTCAGTGTTCAATTCTAGAA
TAACTCTGGGACAATACTGGAAGCGCAAAACCTTATGCATGCCCGCAGTGGTTGCTCGGG
TTAGACGACACAGCGCAGCGATTGGTGAGAGAAGGGCGGTACCTTGAACAGAGGAGCAAG
TACCTGGCGGCCATAGCGGCGATCAGGGACGCCTTTGGGCAACTGTCCTGCAATGAGAAG
CAGTAGCAGGCCTGATGCATTGGAGCTGCCATTCTGGTAATAGATATGTACTACTTGGCT
ACATTGTAGTTTAATATTTTGCTTCTTTCTAATGTGTATATATTGTATATCCTTGAATGT
TTGTTTTGTGGTGAAACTTCACAAACTTCTGGATGTACTTTGTTAC

Homology of Contig U35_49437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None