- Probe CUST_33883_PI390587928
- Source Contig U35_25480
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33883_PI390587928 | Hv_44K_v2 | CTCGTAGGAGGCTGGCTGACCATGGTAGGGGAGCAGTAGCTGTTTTTGTTAGGCTGAAGC | 390 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.636 | 2.190 | 1.628 | 1.012 | 0.350 | 0.347 |
| Raw | 5068.020 | 10734.653 | 6677.917 | 6380.990 | 822.349 | 870.789 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66582.1 | 1523 | 2e-24 | 1412 - 1471 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_66582.2 | 1801 | 2e-24 | 1375 - 1434 | 100 | 60 / 60 | plus | ABC24430 |
| JLOC1 | JLOC1_43892.1 | 1556 | 8e-25 | 1299 - 1358 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26595 | 450 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25480 | 450 | 3e-25 | 391 - 450 | 100 | 60 / 60 | plus |
Contig Sequence (450 bp)
>U35_25480 450 Hv_44K_v2 GGTTCCACCAGCTCTTCGAGGGCGTCGGGCTTGGAGGGTGCATCGTTCAGGCCAAGTTTC GGCTCAGGTCTGTGGTGGCGATGGGGCTGCTCTTCTCCATGACGACCCCGGTGGGGATCG GCGTCGGCATCGCGATATCGTCGGTGTATGACGAGAGCAGCCCGACGGCGCTGGTCGTGC AGGGGCTGCTGGAGGCGGCCGCGGCGGGGATACTGGTCTACATGGCGCTCGTGGACATCC TGGCCGAGGACTTCAGCAAGCCCAGGGTGCAGAGCAGAGCGCGGCTGCAGCTCGCGCTCA ACGTGTCGCTGCTGCTCGGGGCTGGCCTCATGTCCCTGCTCGCAATCTGGGCATGACGGC ACACCAGAGGTTATTACCATCTGCGTTGTACTCGTAGGAGGCTGGCTGACCATGGTAGGG GAGCAGTAGCTGTTTTTGTTAGGCTGAAGC
Homology of Contig U35_25480 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi2g22520.1 | 361 | 2e-55 | |
| Arabidopsis v10 | None |