barSeed - Barley Seed Development Database

Probe CUST_33881_PI390587928

Source Contig U35_25482

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33881_PI390587928	Hv_44K_v2	CGGATCGTGTTATTTGGCAGTTTTGTTGTAGGATGAAAATAATAGAACTTGATTTGGTCA	577	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354767	1406	2e-24	1201 - 1260	100	60 / 60	plus	None
MLOC	MLOC_34843.1	1211	2e-24	592 - 651	100	60 / 60	minus	None
MLOC	MLOC_34844.1	1657	2e-24	592 - 651	100	60 / 60	minus	None
JLOC1	JLOC1_22511.1	1428	8e-25	1012 - 1071	100	60 / 60	plus
Harvest35	U35_25482	659	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_25482 659 Hv_44K_v2
GCAGCTCCTCTTCGCCTAGCGCGGCCACCGCGACGACCACCACGTCATCCTCGTGCTCCT
CGGCCGCGAGCACGGGCGCCGCCTCCGCGCGGTCGCCGCTGCTCAAGCTGGACTACGACG
AGATCCTGGCCGCCTGGGCGGGCCGCGGGTCCCTCTACATCGGCGGCGCGGCGGGCCACG
TGACGCCCAAGCTGGAGCTTGGTTCTGAGGTGTTCGTGGATGTGGCGCCGCCGCGGCAGG
CGGCGACGTGGAGCTCGCCGGAGGTGTCCGGGAGGGCGGAGCGGGTGAGGCGGTATAAGG
AGAAGCGACATGCCCGGCTGTTCTCGAAGCGGATCCGGTACGAGGGTCGTTTCATCAAGG
ATAAGGAGGGTGTTGCAATGGCCAACTGAGGCGAGCTGCGGCCTTCATCATAAAGACCTT
GCCTCATCCAGTTACAAGAATGGTTCATGAGCCCATTCCATTCCATCTGTAAAATGTAAA
TGATCAGGTTAGTCTCCAGGCTGCCATATACCCAAACCGGATTTGTTGAATCGATCTGCC
GCTTCCTGGTCAAGCGGCAAGCTAATTGTGGTCGCTGCGGATCGTGTTATTTGGCAGTTT
TGTTGTAGGATGAAAATAATAGAACTTGATTTGGTCATAAAAAAAAAACAAAAAAAAAA

Homology of Contig U35_25482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None