barSeed - Barley Seed Development Database

Probe CUST_33865_PI390587928

Source Contig U35_49444

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33865_PI390587928	Hv_44K_v2	CTTGGAAAGTTTCAGCGATTGCCAAGATGAATGAAGTAAACCGAAATCGATTGAGATCTA	388	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60409.1	758	7e-23	306 - 365	98	59 / 60	plus	ABC00054
MLOC	MLOC_60409.2	1283	7e-23	306 - 365	98	59 / 60	plus	ABC00054
MLOC	MLOC_60409.3	1419	7e-23	305 - 364	98	59 / 60	plus	ABC00054
JLOC1	JLOC1_39389.1	1027	4e-23	306 - 365	98	59 / 60	plus
Harvest21	ABC51160	448	3e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_49444	448	3e-25	389 - 448	100	60 / 60	plus

Contig Sequence (448 bp)

>U35_49444 448 Hv_44K_v2
TCGGGAGGTTGCTGGCCGGCGTCACCATCGCGCACGGCGGCGTGCTGCCCAACATCAACC
CGGTGCTGCTCCCCAAGAGGACCGCGGAGAAGGAGCCCAAGGAGGGCAAGTCGCCAAAGA
AGACCGCCAAGTCGCCCAAGAAGGCCGACAAGAAGGCCTAGAGAGATTTGCTTAGCCCCC
TGTAGTGCTCTGTGGTAACATTGCTTGCTGTTTCGCTAATGGTGTCGGTGTAGATCTGTG
CTGCGAATGTCAGAAATCTCTCTGATTTGAGCCAATTGTGTGTTCCTTCTTCTCTTCTTG
GTATTGCAATGTTAGCATAGGTGCGGTGGGAAAGCTCAGATCTGTTCGAATTTGTCGACA
TTTCTCTCTCGTGGTACTGAGCTGAGTTCTTGGAAAGTTTCAGCGATTGCCAAGATGAAT
GAAGTAAACCGAAATCGATTGAGATCTA

Homology of Contig U35_49444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None