barSeed - Barley Seed Development Database

Probe CUST_33863_PI390587928

Source Contig U35_49449

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33863_PI390587928	Hv_44K_v2	TCTTGCCGCCTTGTCATCGCATCACATTGTACAATGTATATATAGCCTTGCCTTGTAAAA	397	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.910	2.060	1.103	0.823	0.424	0.438
Raw	189.915	317.389	150.763	179.297	31.510	35.822

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372083	2884	3e-22	2798 - 2853	100	56 / 56	plus	None
MLOC	MLOC_4452.3	4419	3e-22	1759 - 1814	100	56 / 56	minus	ABC11505
MLOC	MLOC_4452.2	4539	3e-22	1927 - 1982	100	56 / 56	minus	ABC11505
MLOC	MLOC_4452.4	2821	3e-22	63 - 118	100	56 / 56	minus	None
JLOC1	JLOC1_2771.2	4379	1e-22	2551 - 2606	100	56 / 56	plus
JLOC1	JLOC1_2771.1	4399	1e-22	2551 - 2606	100	56 / 56	plus
Harvest21	ABC51169	457	3e-25	398 - 457	100	60 / 60	plus
Harvest35	U35_49449	457	3e-25	398 - 457	100	60 / 60	plus

Contig Sequence (457 bp)

>U35_49449 457 Hv_44K_v2
GGCAGCGTGACGGGGGGCAACAAGCCGCGTCGCAGCAACAGCAGGTCCCGCAGCCGCAGC
AGCAGGCTGCGCCGGAGGGAGGGAACGGGAACGGCGGGGTGATGGTGTGTCACCGGGAGT
CGAAGCCGTTGTGCAAGTCCAAGTCGAGGAAGCTGGGGCGGACGCTGAGCTCGCTGTGGA
AGAACCGGGGCTTCTCCCTCTACCAGTGCTAGCAGCAGCAGGCAGGGTTTTTGGGGTCTG
GCTCGTCAGTAGGATCTGTACATCTCCCCTCTTTTCTTGCTTCTTCTTCCACTTTGGCGC
CGTGGCTGCTGCTTCCTTCGTTTGGGTTAAGTAAGTTGAAAGAGACTAGTGCTTCTTCCC
CCCCTCCTCGGTGGGGTGATGTAGGGCATTCCCCCCCTCTTGCCGCCTTGTCATCGCATC
ACATTGTACAATGTATATATAGCCTTGCCTTGTAAAA

Homology of Contig U35_49449 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None