barSeed - Barley Seed Development Database

Probe CUST_33860_PI390587928

Source Contig U35_25492

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33860_PI390587928	Hv_44K_v2	ACTTGCCATTGTCATACCATCACTTCAGTCCTTCATTGCTGATAGCTACAGAGATGGCAC	501	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250076.1	1996	2e-24	545 - 604	100	60 / 60	plus	ABC16772
MLOC	MLOC_65434.1	2360	2e-24	1676 - 1735	100	60 / 60	minus	ABC16772
MLOC	MLOC_65434.6	1907	2e-24	1312 - 1371	100	60 / 60	minus	ABC16772
MLOC	MLOC_65434.2	2103	2e-24	1335 - 1394	100	60 / 60	minus	ABC16772
MLOC	MLOC_65434.3	1992	2e-24	1313 - 1372	100	60 / 60	minus	ABC16772
MLOC	MLOC_65434.4	1999	2e-24	1313 - 1372	100	60 / 60	minus	ABC16772
JLOC1	JLOC1_43061.6	2219	8e-25	615 - 674	100	60 / 60	plus
JLOC1	JLOC1_43061.5	2135	8e-25	531 - 590	100	60 / 60	plus
JLOC1	JLOC1_43061.4	2536	8e-25	591 - 650	100	60 / 60	plus
JLOC1	JLOC1_43061.2	1971	8e-25	367 - 426	100	60 / 60	plus
JLOC1	JLOC1_43061.1	2401	8e-25	456 - 515	100	60 / 60	plus
Harvest21	ABC26996	694	3e-25	219 - 278	100	60 / 60	plus
Harvest21	ABC21942	612	3e-25	502 - 561	100	60 / 60	plus
Harvest35	U35_28239	694	3e-25	219 - 278	100	60 / 60	plus
Harvest35	U35_25492	612	3e-25	502 - 561	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_25492 612 Hv_44K_v2
CTCGCGGCAGGCTAGTCGTTGCTTGCTCCGATTTTCCACCCACAATCCGCGGGCCAAAAC
ACCCGGGGAGCCAAGCACCAAACCGAGAGGTTCTCCTCTCAACCGCGGATCTACCACCAG
TTGCGCGAGGCTCCGGCCTTCCGCTCCTCCAAGCTCTTCCAGCATGAGGGGAAGAAAGAT
GATTTATGGATTCTCCATCTCCCTTATCCTCATCAACCTGGCCTCCATAATGGAGCGGGC
TGATGAGAATCTCCTCCCCGCTGTTTACAAGGAAGTCAGTGCCGCCTTCGATGCTGGTCC
TACTGATCTGGGGTACCTTACCTTTATAATGAACTTTCTGAAGTCCATAGCATCTCCCTT
GGCAGGTGTCCTTGCTCTTCAGTATGACCGCCCCACTATTCTTGCCATCGGAACTGTCTT
CTGGGCTCTATCAACAGGGGCCGTTGGCGTCAGCCAGTATTTTCAGCAGGTTGCGTTCTG
GAGAGGTGTAAATGGTGTTGGACTTGCCATTGTCATACCATCACTTCAGTCCTTCATTGC
TGATAGCTACAGAGATGGCACCCGTGGCGCCGGTTTTGGTTTGTTGAGCCTCATTGGCTC
AATAGGTGGTAT

Homology of Contig U35_25492 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59450.1	471	2e-68	protein\|transporter-related, putative, expressed
Brachypodium v1_2	Bradi1g04500.1	470	3e-73
Arabidopsis v10	AT4G36790.1	489	5e-52	Major facilitator superfamily protein \| chr4:17336360-17338304 FORWARD LENGTH=489