barSeed - Barley Seed Development Database

Probe CUST_33857_PI390587928

Source Contig U35_25497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33857_PI390587928	Hv_44K_v2	TCTCCATCGATCACTTGCTGCCATGGCCGTGAACGACACCAAGCTGGCCGACGCCGAGAA	67	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356482	1154	2e-24	52 - 111	100	60 / 60	plus	ABC15697
MLOC	MLOC_38253.1	657	2e-24	252 - 311	100	60 / 60	plus	None
JLOC1	JLOC1_24861.1	579	8e-25	175 - 234	100	60 / 60	plus
Harvest21	ABC25166	604	3e-25	68 - 127	100	60 / 60	plus
Harvest35	U35_25497	605	3e-25	68 - 127	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_25497 605 Hv_44K_v2
CCGGAGCGTGTGTCCTCCACACTACTGCCAGCCTGCTTGCTTGCTTCCTACCAGCTGCCT
CCCGCCATCTCCATCGATCACTTGCTGCCATGGCCGTGAACGACACCAAGCTGGCCGACG
CCGAGAACCCGGGCACGATGTGCCGCGCCATCGACTCCGACTCCGACGTCGACTTCGCCG
GCCGCGCCAACTGGCTGCGCGCGGCGGTGCTGGGCGCCAACGACGGGCTGGTGTCCACGG
CGTCGCTCATGCTGGGCGTGGGCGCCGTGAAGCACGAGGTGCGCGCCATGGTGATCTCCG
GGTTCGCGGGCCTGCTGGCGGGGGCCTGCAGCATGGCCATCGGGGAGTTCGTGTCCGTCT
GCTCCCAGCGCGACGTGGAGATCGCGCAGCTCGACCGCGACGGCAAGCGCGGCGGCGACG
AGGAGAGGGCGCTGCCCAGCCCGATCCAGGCGGCGGCGGCCTCGGCCCTCGCCTTCTCCG
TGGGCGCGCTGCTGCCGCTGCTGGCGGCCGGGTTCATCGTCGGCTACAAGCTGCGGGTGG
CCGTGGTGGTGGCCGTGGCGACGCTGGCGCTGGCGGCGTTCGGGGTCGTCGGGGCCGTGC
TGGGG

Homology of Contig U35_25497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59020.1	209	3e-54	protein\|integral membrane protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None