barSeed - Barley Seed Development Database

Probe CUST_33856_PI390587928

Source Contig U35_25498

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33856_PI390587928	Hv_44K_v2	ATCAACCTCCTGATTTCGGGGAACATCATCGCGCCGGAGAGCCCGGAAGAGTGGTCGGAC	322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3236.1	1695	2e-24	1091 - 1150	100	60 / 60	minus	ABC17711 ABC21718
JLOC1	JLOC1_1938.1	1812	8e-25	463 - 522	100	60 / 60	plus
Harvest21	ABC25508	548	3e-25	323 - 382	100	60 / 60	plus
Harvest21	ABC31570	581	1e-23	420 - 479	98	59 / 60	plus
Harvest35	U35_25498	549	3e-25	323 - 382	100	60 / 60	plus
Harvest35	U35_31389	581	1e-23	420 - 479	98	59 / 60	plus

Contig Sequence (549 bp)

>U35_25498 549 Hv_44K_v2
TGGCTGAGCAGTGGCAGCCACGCCGAGCGAGGTAGCTAGCTGACCTGCCTGCATGGCGCT
TCGTGCAAGGACGACGCTCCTGCTGGCGGCTCTCGCCGGCGCCGCCGCGGCCCTCCTGCT
GCCGGGCGCCGTCGAGGCCCACGTGCTGCTCTCGCTCGACGACTTCGGCGCCGTCGGGGA
CGGCATTGCCAACGACACCCACGCATTGGTCGACGCGTGGAAGGCGGCGTGCGCCACCGG
CGGACACACCTACCTCAACGTCCCCGTCGGCAAGTCCTACCAGATCTGGCCCGTCACGCT
CGCCGGCCCCTGCCGCGACGAGATCAACCTCCTGATTTCGGGGAACATCATCGCGCCGGA
GAGCCCGGAAGAGTGGTCGGACGGCGACCAGGGCAGGTGGCTCCACTTCCGGGGCGTGGG
CGACCTGTCGCTGAGCGGCGGCGGCATCGTCGACGGGCGGGGCCAGCAATGGTGGGCGGG
GACCTGCGAGGACNANAACTGCACCTCGCACCGCCAGCACGAGGTCGCACCCATGGCGCT
CCACTTCGA

Homology of Contig U35_25498 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46520.1	446	2e-62	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi2g18050.1	438	4e-60
Arabidopsis v10	None