barSeed - Barley Seed Development Database

Probe CUST_33855_PI390587928

Source Contig U35_25499

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33855_PI390587928	Hv_44K_v2	GGCATGTTAGGAAATGGGAAATTCCTTAATGATTCTGCACGACCTCATCCTGATGACCCT	598	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.371	1.648	1.631	0.941	0.463	0.393
Raw	628.318	1179.553	999.487	866.243	155.711	146.207

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70277.1	4224	2e-24	1883 - 1942	100	60 / 60	plus	ABC10954 ABC10955
JLOC1	JLOC1_46637.1	4234	8e-25	1881 - 1940	100	60 / 60	plus
Harvest21	ABC26517	661	3e-25	599 - 658	100	60 / 60	plus
Harvest35	U35_25499	661	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_25499 661 Hv_44K_v2
ATTCAACGACCCTAGTACTGACCATGTCTTCCCTAGTGGCTCTTATCTTAATGTTTTTTT
TGGGCAGGACATTACATCATCAGGTGGAAGACGCACGGTTGGTAGTAGTTGGTTATCTGT
GAGTCAAGGCATTGCATTTGATACTCCTGACATGGCTTTTGATACAATGGGTGATGATTT
GCCTGAGTATCCAAATGAGTATTGGGACTCTGATGAGTATGACGATGACGACGATGTTGG
CTACACCCGACAACCAATTGAGGACGAAACCTGGTTTCTTGCACATGAGATTGACTATCC
TAGTGACAATGAGAAGGCAACTGGTCACACAAGTGGTGCTGATCGACATGATCGTCCTAC
AAAGGATGATGATGACGACCAATCATTTGTTGAAGAGGATTCTTACATATCTGGTGAGCA
GTATTTTCATGGGAAGAACATCGCACCGATAGGTACTTCGGAGCGGCCAATAGGACATGG
GATTCCTGATAATGATATGATAGCTCAGTATGATGGTCAACTTTTGGATTCAGAAGAGCT
AAATTTGATGCATTCTGAACCAGTATGGCAGGGTTTTGTGTCACAGAATAGTGAACTAGG
CATGTTAGGAAATGGGAAATTCCTTAATGATTCTGCACGACCTCATCCTGATGACCCTTT
T

Homology of Contig U35_25499 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51020.1	1116	6e-108	protein\|expressed protein
Brachypodium v1_2	Bradi1g10530.2	902	1e-110
Arabidopsis v10	AT3G17750.1	1138	3e-54	Protein kinase superfamily protein \| chr3:6074228-6078428 FORWARD LENGTH=1138