- Probe CUST_33853_PI390587928
- Source Contig U35_37471
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33853_PI390587928 | Hv_44K_v2 | CAGCAGATGCCATTGATTTTCTGTGGGATGTATCAACTGCTACACATGATAATGAAAGGT | 573 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.012 | 0.071 | 0.700 | 1.779 | 1.539 | 2.345 |
| Raw | 161.685 | 1634.230 | 14038.180 | 53178.400 | 16850.000 | 27827.200 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367197 | 1413 | 7e-23 | 1198 - 1257 | 98 | 59 / 60 | plus | ABC05678 |
| MLOC | AK250751.1 | 1306 | 7e-23 | 1230 - 1289 | 98 | 59 / 60 | plus | ABC05678 |
| MLOC | MLOC_1426.1 | 3123 | 7e-23 | 1016 - 1075 | 98 | 59 / 60 | plus | ABC05678 |
| JLOC1 | JLOC1_879.1 | 1360 | 4e-23 | 1014 - 1073 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC05678 | 1310 | 1e-23 | 1217 - 1276 | 98 | 59 / 60 | plus | ABC05678 |
| Harvest35 | U35_37471 | 636 | 3e-25 | 574 - 633 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2241 | 1325 | 1e-23 | 1229 - 1288 | 98 | 59 / 60 | plus |
Contig Sequence (636 bp)
>U35_37471 636 Hv_44K_v2 CACGCGTCCGTATTACCCACTATGCAGGCAGCTTGGTATCGGTGTTGTCCATACAGCCCA CTTGCTCGTGGTTTCTTTGCTGGCAGGGCAGCCGTAGAGAGCATACCATCAGGGAGTTTA CTGTCCAAACATCCTCGGTATAACGGAGAAAACCTGGAGAAGAATAAAGTTCTGTATACA CGACTTGAAATGTTGTCCACCAAGTATGGCTGCACACCTGCTCAACTTGCTCTTGCCTGG GTTCTTCATCAAGGGGACGATGTCGTTCCAATCCCTGTGAAGAACCTTGATGATAACATC GAGGCTGTAAAGGTAAAGCTGAGCAAGGAAGACCTGGAAGAAATCTCAGCTGCTGTCCCC GCCGGCGACGTGGCTGGGTCCAGGGTCATTGGAATCCTGGAGCCTTATTCTTGGAGGGTT GCAAACACTCCACCTCAAATGTAGCCATGTTACCGCCTTATGCTGAATTTGTTTCCACCT TGCTGGATACAAAAAATAAGTACATTCAAGGGGGGAAATGTGAATGAATCAAGCTCATCC ATACTCAACAATAGGGAAACATTGTTCCTGAAACAGCAGATGCCATTGATTTTCTGTGGG ATGTATCAACTGCTACACATGATAATGAAAGGTGGC
Homology of Contig U35_37471 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g28320.1 | 344 | 6e-73 | protein|oxidoreductase, aldo/keto reductase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi3g26900.3 | 244 | 8e-77 | |
| Arabidopsis v10 | None |