barSeed - Barley Seed Development Database

Probe CUST_33852_PI390587928

Source Contig U35_37474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33852_PI390587928	Hv_44K_v2	ATTCCACGTCGCTCTCCAGGAACAATAATTGGGACTCGAGAGGAACCCGTAGCCAGACGG	103	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74720.2	1940	2e-24	71 - 130	100	60 / 60	plus	None
MLOC	MLOC_74721.1	618	2e-24	270 - 329	100	60 / 60	plus	None
MLOC	MLOC_74720.1	2139	2e-24	327 - 386	100	60 / 60	plus	None
Harvest35	U35_37474	695	3e-25	104 - 163	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_37474 695 Hv_44K_v2
CCATTACCAGCATACAAGCTTGCGCTTAATCTGGGGACGGACTGGAAGGATCCTTCACTC
AATCAAAGCCACCTCTCCGCCAAGCTCTCCGCGGCATCAATACATTCCACGTCGCTCTCC
AGGAACAATAATTGGGACTCGAGAGGAACCCGTAGCCAGACGGGGAGGCGCAGGAATCGC
GAATCGATGGGCAGCGTCGAGAGGTCGGAGGTGGCGCTATCCAGCCTTCCGCCGCCGCAG
CCACCGCCACCGCCGGTGGCGGCGCCCGCAGGAGCAGGCTCTGCGGACGCAGGGCAAGAG
AAGCCCGCCCAGAACGGCGGACCGGCGACCGGCGCCGCACCGGCGATGGGCGAGGAAGGC
ACGGAGTACCGGGGCCTCCCTGGCGGCGCGCCAGCGCCATCGCCGGCGTCGCTCTCGATC
GTCCCGCTCATCTTCATCATCTTCTACGAGGTCTCCGGCGGGCCGTTCGGTATCGAGGAC
AGCGTGGGCGCGGCGGGGCCGCTCCTCGCCATCGCGGGCTTCCTTGCCCTCCCCGTCATC
TGGAGCGTCCCGGAGGCCCTCATCACGGCGGAGCTGGGCACCATGTTCCCGGAGAACAGC
GGCTACGTCGTGTGGGTGGCCTCGGCGCTCGGCCCCTACTGGGGGTTCCAGCAGGGCTGG
ATGAAGTGGCTCAGCGGCGTCATCGACAACGCTCT

Homology of Contig U35_37474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47210.1	565	4e-53	protein\|amino acid permease family protein, putative, expressed
Brachypodium v1_2	Bradi3g52510.1	531	5e-54
Arabidopsis v10	None