barSeed - Barley Seed Development Database

Probe CUST_33851_PI390587928

Source Contig U35_37475

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33851_PI390587928	Hv_44K_v2	TTGAACTGCATCTTGCTCAGAGTACCTGACGGAAAGATCGCCGGAGCCGGCCTGATTCCT	25	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66665.3	689	2e-24	298 - 357	100	60 / 60	plus	None
MLOC	MLOC_66665.2	2144	2e-24	386 - 445	100	60 / 60	plus	None
JLOC1	JLOC1_43962.2	3630	8e-25	1598 - 1657	100	60 / 60	plus
Harvest35	U35_37475	670	3e-25	26 - 85	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_37475 670 Hv_44K_v2
CACGCGTCCGCAACTACATATCTTGTTGAACTGCATCTTGCTCAGAGTACCTGACGGAAA
GATCGCCGGAGCCGGCCTGATTCCTCGGAGATGGCGAAGCCGGGAAGGCGCCCTGTAAAC
AAGTATGCACTTGCCGCCACCGTGCTCTCGGCGGCGACGCCCCTCTTCTTGGGCTACGAC
CTGGCCATGGTGAGCAGCACGGCCGTGCTCGCGGAGGCCGACCTGAGGCTCCTGGCGTGC
ATAGTGGTGCTCTCCACCCTCGTGGGCGCGTTCACCGCCGTGGTAGCGCAGTGCCTCATC
GGGGACCGCCGCACCGTCCTCCTCTCTGCCGCGGTGCTCTGCGTTGGCGCGCTCGCCAGG
GGGCTCGCCGCCGGCCCCGCGGCGTTCGCGGCCGGTGTCTTCGTCAACGGCGTCGGCATG
GGCCAGGCGCTCATGATCGTCCCGGCGTACGTCGCCGAGCTCAGCCCCTCCTCGGTGCGC
GGCGCCCTCACCTCCCACCCGGACGGCTTCGTGTACCTCGGCTGCATCCTCGGCTCCCTC
TGCTACTCCACGGGCTTCTTGAAGCTCCCGGCGCACCTCGCCTGGTGGCTGACCATAGTC
TCCGGAACGGNCGTTCCGGNCTCGCTCAGCTTCGCCGTCCTTCTCATGCCGGAGTCGCCC
CGGTGGCTCG

Homology of Contig U35_37475 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39400.1	668	4e-52	protein\|polyol transporter 5, putative, expressed
Brachypodium v1_2	Bradi1g23420.1	555	7e-70
Arabidopsis v10	None