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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_33850_PI390587928Hv_44K_v2GAAAATGTTACAGTAGAAATTTGGGAGCAGAGTTCCGATCGGTCGTTATCGCTCAAAAAA11GeneList: midnightblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8870.3390.5101.3821.3681.949
Raw 76.96443.84362.365280.90392.026143.048



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_66665.44669e-22374 - 42810055 / 55plus None
MLOCMLOC_66665.221449e-222057 - 211110055 / 55plus None
JLOC1JLOC1_43962.323965e-222035 - 208910055 / 55plus
JLOC1JLOC1_43962.236305e-223269 - 332310055 / 55plus
JLOC1JLOC1_43962.138455e-223484 - 353810055 / 55plus
Harvest35U35_374765393e-2512 - 7110060 / 60minus



Contig Sequence (539 bp)

>U35_37476 539 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGCGATAACGACCGATCGGAACTCTGCTCCCAAATTTCTACT
GTAACATTTTCCATTCCCGCACGAACATCCACGAGGCACCGACTGCGTGCTATCGCCAGT
CCTCGTTAGCGCGCACGCACAGGAGAAATGCAAGAATGGCGTCGCTAGCATCGCCTGGCC
AATGACCGGAGGGAACCCATCCTTGCCTGCGGTGCCGTCGCCCGTTCAGCCGTGGATCAA
GCTGGCTAGACTAGCGGCGGACGTGGTTATTGGGAAAGACCGTACGTGAATGAAGCTGGC
TCGCCTCCTCCTCGCGCCAAGAAGGCACGCACAAAAGAACATCCACACGAGCACGCCGAC
CGCGGGGCAAACGAGCAAGCCCCCGTGCACGGGAACGGAGGTGGCACCGTACGCCCTCGC
GAAGCTCCACAAGACCGACGCCGTGTTCGCCACGGTTGCCGCCGCCCACAGCCACCGGCT
GCTGCCGGACGACGACGCAGCGTCCGCCCACTGCGCCGGCCCGGGCGCGATCCACACCA



Homology of Contig U35_37476 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None