barSeed - Barley Seed Development Database

Probe CUST_33825_PI390587928

Source Contig U35_49476

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33825_PI390587928	Hv_44K_v2	ATAAGGAAAGCACTGTCGTCATCTTCACAAGTTACCCCAAAGGCTGATGGTACTGCAACA	163	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.688	1.331	1.103	0.629	0.322	0.246
Raw	4403.113	5026.777	3911.253	3302.423	639.517	521.455

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70474.1	1338	2e-24	424 - 483	100	60 / 60	minus	None
MLOC	MLOC_70474.2	1551	2e-24	424 - 483	100	60 / 60	minus	None
JLOC1	JLOC1_46769.1	2907	8e-25	1112 - 1171	100	60 / 60	plus
Harvest21	ABC51210	252	3e-25	164 - 223	100	60 / 60	plus
Harvest35	U35_49476	252	3e-25	164 - 223	100	60 / 60	plus

Contig Sequence (252 bp)

>U35_49476 252 Hv_44K_v2
ACTGGAATTTCTTGGTTCTGTCACANAAATTTCATTTGATGATGCAGCATCTGTGCCTAT
CAAGAATCATGAGATTACTACAGATGAGATAAAAAATCTTTGTGATGATTTACGTGTGCT
GGATAAAAATAGCTTCAAGCATATCTTGAAGTGGCGCATACGCATAAGGAAAGCACTGTC
GTCATCTTCACAAGTTACCCCAAAGGCTGATGGTACTGCAACAGAGACCAAGGTCAACGA
TGATGACCAACT

Homology of Contig U35_49476 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None