barSeed - Barley Seed Development Database

Probe CUST_33821_PI390587928

Source Contig U35_45669

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33821_PI390587928	Hv_44K_v2	TACACTCAGATGAAGATATTTGCGGCAGTTCTTCTCCACCACTTCAGGTTTGAGATGTGG	117	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60830.1	539	3e-21	314 - 373	97	58 / 60	minus	ABC32846
JLOC1	JLOC1_39706.1	1983	2e-21	1461 - 1520	97	58 / 60	plus
Harvest21	ABC44806	220	3e-25	118 - 177	100	60 / 60	plus
Harvest35	U35_45669	220	3e-25	118 - 177	100	60 / 60	plus

Contig Sequence (220 bp)

>U35_45669 220 Hv_44K_v2
GAGGAGTTCAGGCCGGAGCGGTGGCTCTACTACGACGGCGTGTTCGTCCCCGAGAGCCCC
TACAAGTTCACGGCTTTCCAGGCGGGGCCACTGATCTGCTTGGGAAAGGAGTTCGCGTAC
ACTCAGATGAAGATATTTGCGGCAGTTCTTCTCCACCACTTCAGGTTTGAGATGTGGGAG
CGCGACTCCACGGTGGGGTACCGCCCGATGCTCACGCTCA

Homology of Contig U35_45669 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None