- Probe CUST_33807_PI390587928
- Source Contig U35_45683
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_33807_PI390587928 | Hv_44K_v2 | AAACTAGTTTAGTGAAGAATGGAGACCAGACGTCCAGCGCTTTCCGGCGTGACCGTGGGG | 6 | GeneList: lightcyan1 MasterList: Reassembly_Function_Probe_Module |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.129 | 0.182 | 1.022 | 2.455 | 1.332 | 1.747 |
Raw | 11.006 | 22.252 | 114.746 | 398.678 | 89.591 | 121.716 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK375435 | 1030 | 7e-23 | 40 - 99 | 98 | 59 / 60 | plus | None |
MLOC | MLOC_78741.1 | 242 | 7e-23 | 97 - 156 | 98 | 59 / 60 | minus | None |
JLOC1 | JLOC1_52474.1 | 272 | 4e-23 | 167 - 226 | 98 | 59 / 60 | minus | |
Harvest21 | ABC44835 | 121 | 3e-25 | 7 - 66 | 100 | 60 / 60 | plus | |
Harvest35 | U35_45683 | 121 | 3e-25 | 7 - 66 | 100 | 60 / 60 | plus |
Contig Sequence (121 bp)
>U35_45683 121 Hv_44K_v2 CACATCAAACTAGTTTAGTGAAGAATGGAGACCAGACGTCCAGCGCTTTCCGGCGTGACC GTGGGGGCGGTAGTGTTGATCCTGGCCTTGTCACCCGAGATGGCCGTGGCAAGCGGTGGC T
Homology of Contig U35_45683 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |