barSeed - Barley Seed Development Database

Probe CUST_33801_PI390587928

Source Contig U35_45693

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33801_PI390587928	Hv_44K_v2	ATGATGGATCGGACCTCTCTGGTGAGGAAGCTGATAACGAGAAGAAGAAATCGAAAAGAG	485	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60118.3	1210	2e-24	871 - 930	100	60 / 60	plus	None
MLOC	MLOC_60118.2	2837	2e-24	2298 - 2357	100	60 / 60	plus	None
MLOC	MLOC_60118.1	2856	2e-24	2316 - 2375	100	60 / 60	plus	None
JLOC1	JLOC1_39174.1	2856	8e-25	2316 - 2375	100	60 / 60	plus
Harvest21	ABC44861	554	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_45693	554	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_45693 554 Hv_44K_v2
AACACTGTCCAGACGGAGTGCCAGTCTAATGCAACTTGTGTATGGGCAAGCTTCAGCAGA
ACTAGACAATGACAGCGGCGAAGAAGGTAGCTCTGATGAAGAAATTTTTGTACCGAAAGG
ACAAAAAAAGCAAGTAAAGAATGAATTACCAAGCTTTGATGATATTGATGCTGAGGATTA
CTCTAAGTTCTCGAAAGTGGAGCTACGTGATTGGTCTAACGAAGATCTCATCAAAACCAT
CCCCGACCGTTTTGTGACTGGAGATTGGTCAAAAGCTTCTCTGAGAGGCCGTGAGGTAGA
TGAAAATGGAGAGGGTGATGAAGAAATCGATGGTGATTTTGAAGATCTGGAAACTGGTGA
GGTACACAAGAGCCAGGCTGCTGAAAATGCAGCTGGGACGCCAGGTGTTCACAAAGAAGA
CGAACTAAAAGTTGAAGAGCTAAGACTCAAGAAGCTTGCGCTTAAAGCAAAATTTGATTC
AGAATATGATGGATCGGACCTCTCTGGTGAGGAAGCTGATAACGAGAAGAAGAAATCGAA
AAGAGAGCAATCGG

Homology of Contig U35_45693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21530.1	1181	3e-53	protein\|AARP2CN domain containing protein, expressed
Brachypodium v1_2	Bradi1g63330.1	1179	1e-56
Arabidopsis v10	None