barSeed - Barley Seed Development Database

Probe CUST_33800_PI390587928

Source Contig U35_45694

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33800_PI390587928	Hv_44K_v2	GATGTTCATTGCGGTTGTGCGGCAAAATGAACAAAGATAACGTATGGTGAAAACAAAAAA	11	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.082	0.777	1.537	1.670	0.889	0.957
Raw	283.100	4605.283	7540.520	12954.667	2417.630	2812.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC44863	532	3e-25	12 - 71	100	60 / 60	minus	ABC44863
Harvest35	U35_45694	532	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (532 bp)

>U35_45694 532 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTTTTCACCATACGTTATCTTTGTTCATTTTGCCGCACAACCG
CAATGAACATCACATGGCCAACGCTTACACATACTTTACAGCAGATATCTGCTGTGAGCC
TGTGACCACACATGCATGGCTAAGCATACAGCTCGGTGATGGACATAAACCCCAACACAG
GCCGTGTCTTGTAGCGGCTGAACCCTGCGTCCATGAAAATCTTGCGCCACTCATGCTCGT
CACGCTCCTTGCCCGCTGCGATCACCATCATCAGCAGATCAAACGAGGCTTGGGCTTCGA
GCATGGCTTTCAAAGGGGATCCGACCACTATATCTATGATTATCACTTTCCCGCCTGATT
TGGGGATCGCCTTCTTGCACTGGGTCAATATCTTCACGCAGTCCTCGTCGTTCCAGTCAT
GCAACACGTACTTGAGGAACACCGCATCGGTCGTTGGAATGGAGCTCATCATGTCACCAG
AGATGTACTCGACCACGCCGTCGGACGGGATGGAATTCACCACGTTGGGGAG

Homology of Contig U35_45694 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g19420.1	376	5e-55	protein\|O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g37551.1	355	6e-59
Arabidopsis v10	None