barSeed - Barley Seed Development Database

Probe CUST_337_PI390587928

Source Contig U35_20038

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_337_PI390587928	Hv_44K_v2	ATTTTCGACAGGAATGTCATCTACCATTCAGCGGTATCCGAGCATGGACAACATTGCTAC	947	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.930	1.003	1.823	1.779	0.872	0.486
Raw	15.988	26.273	42.512	63.934	11.008	6.019

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356019	4923	2e-24	4255 - 4314	100	60 / 60	plus	ABC09734
MLOC	MLOC_81720.2	2704	2e-24	675 - 734	100	60 / 60	minus	ABC09734
MLOC	MLOC_81720.3	2618	2e-24	580 - 639	100	60 / 60	minus	ABC09734
MLOC	MLOC_81720.1	2757	2e-24	804 - 863	100	60 / 60	minus	ABC09734
JLOC1	JLOC1_54358.1	3007	8e-25	1896 - 1955	100	60 / 60	plus
Harvest21	ABC13135	976	3e-25	840 - 899	100	60 / 60	plus
Harvest35	U35_20038	1084	3e-25	948 - 1007	100	60 / 60	plus

Contig Sequence (1084 bp)

>U35_20038 1084 Hv_44K_v2
GCGAAACTAGTTGGGAAGCTATTTACCTCGCTTGATAAATCTATATCCCGCATGATGGGC
ACACCATCCGCAACACTTCCACCAGTGCCACAGGGCTCTGTTGGTGATAAGGAAATCTAT
TCAGCACCTGCAGCTGCAAAATTTGTAAATAGCCAATCAGTAATGACGATGTCATCGTTA
ACTGCATCCCCTTCAGTGCATTCTATTACTGAAATGGCAGAGAATAGTGGTGGCGCTGGC
AGGAAGATTGCACACAACAGAAGTGTTTCCGAACCAGACTTCGGCAAACCACAAAAACAG
GGTTCGCGATCGGATAATACACAGAGCAGTGCATCGGGTTCAAGATTTGGTTGGATTGGC
TCCACGCTGCAGAAGACAATGGGATTTGTTTCAAAATCCCGCCAGGCAAAATTAGGGCAA
CAGAACAAGTTTTACTACGATGAAAAGCTGAAGCGATGGGTAGAGGAAGGTGCTGAGATT
CCTGCTGAGGAGCCTCCTCTCGCGCCACCTCCAACAAAATCCTCCTCATACCAGAATGGA
ATGCCGGACTATAACTTAAATGGCCCTGCTAGTGGAATGCATATTCCTAATGGAGTGGCA
GAACGAAGATCTCCAAAACATTCAGATCATGGTTTGGGGATGCCACCAATTCCACCCAGC
CAGAACCAGTTCTCTGCTCGTGGACGAATGGGTGTCCGGTCCAGATATGTGGACACATTC
AATAAGGCTGGTGCAACTGGAGCAGCCCAGTCTTATAATAGACCGGCTGCTCCATCTGTG
ACACCACCTACTGGTGCCAGGTTCTTTGTTCCCACAGCAGCTGCTGTCGCTGCAGAGCAG
ATGCCTAGCCAATCAGCGGAGACACGTGGCGAAACCTTCCCTCGGGATGAGCGTTCATCC
TCACCCCCAGCAGAAACATCATTTTCATCACCCCCGCCAGCAGCACAATTTTCGACAGGA
ATGTCATCTACCATTCAGCGGTATCCGAGCATGGACAACATTGCTACCCCGAACCAGGCN
ACCCTGGATGTCCCCGGGAAGTAACAGCAGCTCATTCGCATCAAGATCACGGGCAGCATC
ATGG

Homology of Contig U35_20038 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01490.1	1515	7e-135	protein\|expressed protein
Brachypodium v1_2	Bradi3g00792.1	1510	5e-170
Arabidopsis v10	None