barSeed - Barley Seed Development Database

Probe CUST_3379_PI390587928

Source Contig U35_11874

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3379_PI390587928	Hv_44K_v2	ACATCTTCTACAGCAACGCGGTGCTGGACGGGGAGATGACGGGGTTCTGGACGAAGCTGC	235	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58957.1	1883	2e-24	726 - 785	100	60 / 60	plus	ABC19112
MLOC	MLOC_58957.2	1412	2e-24	255 - 314	100	60 / 60	plus	ABC19112
JLOC1	JLOC1_38332.1	1862	8e-25	726 - 785	100	60 / 60	plus
Harvest21	ABC22251	561	3e-25	236 - 295	100	60 / 60	plus
Harvest35	U35_11874	563	3e-25	236 - 295	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_11874 563 Hv_44K_v2
CGCCAGCTGACCGACCGGCCGTACTCGCTCGGCCCGAACGTGTCCGACTACGACGCCCGC
AGGGCGGCCTGGCTGGCGGCGCACCCTCGGTTCCCGGCCATGGTCGCGCCGGAGCGGCCT
CGGGTGCTCATGGTCACCGGATCGTCGCCGCGCCGGTGCAAGGAGGCGGAGGGCGACCAC
GTGCTCCTCCGCGCGTTCAAGAACAAGGCGGACTACTGCCGCGTGCACGGGCTCGACATC
TTCTACAGCAACGCGGTGCTGGACGGGGAGATGACGGGGTTCTGGACGAAGCTGCCGCTG
CTGCGCGCGCTGATGGTGGCGCACCCGGAGGCGGAGCTGCTCTGGTGGGTGGACTCGGAC
GCCGTGTTCACCGACATGCTGTTCGAGCCGCCGTGGGGCAGGTACGCGGGCCACAACCTG
GTGCTCCACGGCCGGGACGACGAGGTGTACGGCGCCAGGAGCTGGCTCGGCGCCAACACC
GGCAGCTTCGTGCTCCGGAACTGCCGGTGGTCGCTGGACCTCCTGGAAGCGTGGGCGCGC
ATGGGGCCGCGCGGCCCGGTGCG

Homology of Contig U35_11874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19310.1	484	3e-106	protein\|glycosyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g64570.1	454	6e-114
Arabidopsis v10	AT3G62720.1	460	3e-86	\| Symbols: ATXT1, XT1, XXT1 \| xylosyltransferase 1 \| chr3:23201326-23202708 FORWARD LENGTH=460