barSeed - Barley Seed Development Database

Probe CUST_33795_PI390587928

Source Contig U35_4600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33795_PI390587928	Hv_44K_v2	TGAGCAACATGATGCGCATGGTTCATTTGAACATCATGATAGGTTGATCTTTACTTTCAA	647	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.996	1.369	1.430	1.295	0.583	0.493
Raw	626.555	1369.295	1225.028	1730.142	277.177	251.535

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67928.1	2929	2e-24	1220 - 1279	100	60 / 60	minus	ABC11530
JLOC1	JLOC1_44898.1	1980	8e-25	306 - 365	100	60 / 60	minus
Harvest35	U35_4600	722	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (722 bp)

>U35_4600 722 Hv_44K_v2
GGAGGATGAAGGTGTAGAGGAAGAGAAAGGAGAGTTGCAGCCCAAAAGCTGTTCTTGCAA
CCCATTNGGGNCTGCACGCCCACGTGAGGAAGTGCTTGCCGCAAAGGTGGAGAACTTGAC
GAAGGAGGTGTATAAACAGGAGGAGGAGCTAGTGATTCAACCAAAAGTTAGATCTTGGAA
TCCGTTTGGGGCAGCCCGCCCACGGGAGGAAGTGCTTGCTGGGAAGGGGGAAGATTGGAG
GAAGATTGATGAGAAGCTTGAGGCCCTGAAGGTGCGTGAGGCACCACCTGAGGTTAAATC
CTCTGGGAGGAGGGGTTCCCCAGTCCAAGGCGAGGAGAACGAGAACGGGGAAGTGCTGGA
GAGGAGTACTGACAGCGCTTGGAAGAAACCTACTGCAGTTTAGGCTGAAGTACTATCTAA
ACAAGGGTCTGATAACTGATCTCATCCCTCTCAACATTGATTAAATTGCCTTTCCATGGT
TGATCATGTCAAGTTCTAGTGTTTAGTTTTGGGTATGTTATGTGAATTTTATGTTTTATT
CCTGAATTGATTGGTCCTGTTATTGCACTTTATTTTCTAGAGGTGTATGCTAAAAAAAAA
ACGAATGCTGATGTTTGCTGCCTATTCATCAGCTTGTAAGGCGCCCATGAGCAACATGAT
GCGCATGGTTCATTTGAACATCATGATAGGTTGATCTTTACTTTCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_4600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g11110.1	417	1e-54
Arabidopsis v10	None