barSeed - Barley Seed Development Database

Probe CUST_33794_PI390587928

Source Contig U35_4601

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33794_PI390587928	Hv_44K_v2	GAATTTTGATATGGAAATTGTGTTTTTGGAACGTTGTTCATAACATTTCTTGACCGGCCT	1446	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21121.1	1230	2e-24	1096 - 1155	100	60 / 60	plus	ABC11530
JLOC1	JLOC1_14654.1	1735	8e-25	1602 - 1661	100	60 / 60	plus
Harvest35	U35_4601	1523	3e-25	1447 - 1506	100	60 / 60	plus

Contig Sequence (1523 bp)

>U35_4601 1523 Hv_44K_v2
CACCGCACGCACACCAACAACCAGAGCGCGCCGCAGGAACACTCGACGACATGGCCGTCG
CCTCCGCCTGGGCCAAGCCCGGCTCATGGGCCCTCGCCGCCGAGGAGCAGGACGACCTCC
CCCCGCCGCCGCCCCCCGTCCCAGCCTCCGACTTCCCCGATCTAGCCACCGCCGCCACCA
CCAAGGTCCCCAAGAAGAAGAAGGTCCAGCCAGTCTCCCTCGCCTCGTTCAACAGCGCCA
AGTTCGTCCCCTCCTCCTCCCGCGGGCCCACCCCTGACATGCTGCTAAGCCTCCCCACAG
GCCCCCGCGAGCGCACTGAGGAGGAGCTCGGCGGGGCACGCTGGGGCAACGTGTCTCGCG
GCTCCGACGAGCCGCGACGTGGCGGATCTGGCACGGAGGACTACGGCCCGTCGCGCGCCG
ACGAGGCGGGTGATTGGGGTGTCAAGAAGCCGATGGAGAGGAGGGAGCGGATGGGTGGGT
TTGGCGGTGATTCGTTTTCGTCGCGTGCTGATGACGTCAACGACTGGGTGTCCACCAAGA
AGACGGCGCCCTCTCTGCCCATGGAGAGGAGGGAGCGTAGCAGCGCGTTTGGTAGCGAGT
CGCAGGGACGCGCTGACGATTCCGCGAGCTGGGTCTCCAACAAGAGCTACTCTGCTCCGC
CACCCGCACCTTCGGATGGCCGAAGGGGTGGGTCAGTTTGGGGTTTCAATAGGGATGGTT
GTTCAGATGCTGATTCTTGGGCAAGGAAGAGAGAGGAGGTAAGCAGTGGTGGTGGTGGTA
GCAGTGCCCGTCCGCGTCTTGTTTTGCAGAAGCGAACTTTACCGGTTGCCGTTGTAACTG
GTGGCGAGGAGGATGAAGGTGTAGAGGAAGAGAAAGGAGAGTTGCAGCCCAAAAGCTGGT
CTTGCAACCCATTTGGGGCTGCACGCCCACGTGAGGAAGTGCTTGCCGCAAAGGTGGAGA
ACTTGACGAAGGAGGTGTATAAACAGGAGGAGGAGCTAGTGATTCAACCAAAAGTTAGAT
CTTGGAATCCGTTTGGGGCAGCCCGCCCACGGGAGGAAGTGCTTGCTGGGAAGGGGGAAG
ATTGGAGGAAGATTGATGAGAAGCTTGAGGCCCTGAAGGTGCGTGAGGCACCACCTGAGG
TTAAATCCTCTGGGAGGAGGGGTTCCCCAGTCCAAGGCGAGGAGAACGAGAACGGGGAAG
TGCTGGAGAGGAGTACTGACAGCGCTTGGAAGAAACCTACTGCAGTTTAGGCTGAAGTAC
TATCTAAACAAGGATCAGAGGCTACAGGAGTTGCACCTGCAAATTAATGTATGGCCTTAC
ATGTTGTGAAGACGCCTCGCAATAGTCTACTTAATATATTAACTAGCCTTATTATTTTTG
TTACTCGCGTGTGGCAACAGTTGTAACAAGAGTAGCCTTTATATGCTTCTTGTCACATGG
TATTGAGAATTTTGATATGGAAATTGTGTTTTTGGAACGTTGTTCATAACATTTCTTGAC
CGGCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4601 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g24330.2	442	3e-150	protein\|eukaryotic translation initiation factor 4B, putative, expressed
Brachypodium v1_2	Bradi3g11110.1	417	0.0
Arabidopsis v10	None