barSeed - Barley Seed Development Database

Probe CUST_33782_PI390587928

Source Contig U35_4613

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33782_PI390587928	Hv_44K_v2	GCACGGCCTGCACCCGAAGGCTATATATAAATAACTTTTTTAATACATGGATTCAAAGCA	1776	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.569	1.295	1.080	1.132	0.452	0.415
Raw	3194.330	4202.593	3064.417	4988.397	703.682	701.519

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34088.1	1602	2e-24	585 - 644	100	60 / 60	minus	ABC10382 ABC20973
MLOC	AK370740	2077	6e-24	2019 - 2077	100	59 / 59	plus	ABC08821 ABC10382 ABC20973
JLOC1	JLOC1_22000.1	1226	8e-25	78 - 137	100	60 / 60	minus
Harvest21	ABC10381	844	3e-25	75 - 134	100	60 / 60	minus
Harvest35	U35_4613	1910	3e-25	1777 - 1836	100	60 / 60	plus

Contig Sequence (1910 bp)

>U35_4613 1910 Hv_44K_v2
GCAATCTCATGCCAGAAATGATAGGCTGGTAAGCCTTACTGAAATTTGTATATGCTTGTA
CATGTTTGCAGTCAGACAATATATTTTCGACTTCACATGTGAATGGCAGGCAATATTCTA
ATATGGGTTCAATCATGAAAATACTTGCCACCAATTTGTGAAAGACATCAGAAATGGTTT
ACTGGCACTTATAAATAATATATTACTGAATTCTATGATATGGTGAATTTGTTTGGCTTT
GCAGAAGAGATATGTAATCTTTTTTTGTTGTGTGTGTCTATAGCCTACAACATAGATCAT
GCTGCTTGCAGTTTGTTATTTTCAGGGGTAGAGGTTTTCTTATAATCAACTGCTCGTTGT
AAGTTCTCAATGTAAGTTAGTTATAACCTACAGACAATAGCCACAGTTTGCATGTTCTTG
GCGGGTAAAGTTGAAGAAACTCCCAGACCCCTTAAGGATGTCATACTAATTTCTTATGAG
ATCATCCACAAGAAGGATACCTGCCGCAGTTGCTCGGATCAAGCAAAAGGAGGTTTATGA
ACAACAGAAGGAGCTTATTTTAATCGGNGAGCGTGCTGTTCTTATAACACTTGGTTTTGA
CCTGAATGTGCACCACCCTTACAAGCCTTTGGTTGAAGCAATAAAAAAATTCAAGGTTGC
TCAAAATGCACTTGCTCAAGTTGCCTGGAATTTTGTCAATGATGGGCTACGCACTTCACT
TTGCCTGCAATTTAAGCCCCATCATATTGCGGCGGGCGCAATCTTCCTTGCTGCAAAGTT
CCTCAAAGTCAAGCTTCCAGCAGACGGGGAAAAGGTCTGGTGGCAAGAGTTTGACGTAAC
TCCACGACAGTTGGAAGAGGTTAGCAACCAAATGTTGGAGCTCTACGAGCAGAACCGTGT
TGGGCCACCACCATCACAAGGGAATGATACTGAAGGCAGCTCTGCAAGTGTGGTTAATCA
GCGTGCTCCTGTGAAAGCTGAGGAGCCTCCTGCCCATGAAGCTCATCAAGCCCCTAGACA
GTCGAACATACCAGGCCGTCACGGGCATGACCACCCTCAGCCTGAAAAGCAGAACTCAAA
CCAGAGGATACCCAAGAGCGAAGCAAGGGATGGCACTGCCAACAGCAATGAAGGCACCAA
TATGTCATCATCAATGATGGATGCGATGAAAAAGATAGATAAGGATAAGGTGAAAGCTGC
GTTGGAGAAACGGAGGAAATCGAAAGGCGATGCTGGTAGGAAAGTTGACGTCATGGATGA
TGATGACCTAATTGAGAGGGAGCTGGAACATGGCGTGGAATTGGCTGCCGAGGACGAGAA
GAAACACGACAGAAGGCAGAGCTGGCCCCACCCCGTGCACCGGGAGGATCACCAGAACAC
GGCTCGCAAGGTGGAGAACACCGAAGAGGGTGAGCTGTCACTGGACAGCCAGGAACACCG
CTCCCCTGGCCCTGACATCCGGAAGAGGAAGGAGGTGTACGACAGGAGCAATGACCGCAG
CGCTGAGAGAGACATCAAGAGGCCGAGGCCATGAGATCAAGTATTCATTGTCCTCGCCCT
GGCGAGGGCGATCAGCATTCAGCGGTGGGTGACGGACTGAGAACTGGTGTTTTGGGCGCT
AGTGCGTGATACCTAGTTTTGCATCGCGGGAACACACAGATGCTTGTTTGCCCATGTTGG
GAGATTTGAACTGTGATGTGCTGTAATTTGAAAAGATGAGTATGTACATGTTCAGGTTAT
GGAATATTCGTGCTGAGGAACGATAGGAAAGATGCTGCACGGCCTGCACCCGAAGGCTAT
ATATAAATAACTTTTTTAATACATGGATTCAAAGCAAATTTGGATTGGGCCATTTATATG
GATTTGAAACAAATTTGATTGGTACAAAAAAAAAAAACAAAAAAAAAAAA

Homology of Contig U35_4613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g30020.2	544	2e-115	protein\|cyclin-T1-4, putative, expressed
Brachypodium v1_2	Bradi1g47510.1	488	4e-180
Arabidopsis v10	AT4G19600.1	541	2e-81	\| Symbols: CYCT1;4 \| Cyclin family protein \| chr4:10673619-10676532 FORWARD LENGTH=541