barSeed - Barley Seed Development Database

Probe CUST_33781_PI390587928

Source Contig U35_4614

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33781_PI390587928	Hv_44K_v2	TTATTATTGTCCAACCTTGTGGTGCCATGCTGCGCACGTCTATTTTTATGGTTCTAAGTT	1087	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.301	1.485	1.141	0.704	0.292	0.277
Raw	2216.960	3909.727	2636.820	2514.130	367.744	382.896

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70277.1	4224	2e-24	4038 - 4097	100	60 / 60	plus	ABC10954 ABC10955
JLOC1	JLOC1_46637.1	4234	8e-25	4036 - 4095	100	60 / 60	plus
Harvest21	ABC10954	458	1e-23	382 - 441	98	59 / 60	plus	ABC10954
Harvest35	U35_4614	1168	3e-25	1088 - 1147	100	60 / 60	plus

Contig Sequence (1168 bp)

>U35_4614 1168 Hv_44K_v2
GTGATAGTTTGTGAACTTCTGAAGGCAAATTTGTATGAATTTCAAAAGTTTAACAGAGAA
TCAGGAGGCGAGGTTTACTTTACGATGCCAAGATTACAGTCGATAGCCATTCAGTGTCTG
GAGTCACTGCAGTTTCTGCATGGACTTGGTCTTATTCATTGTGATCTGAAGCCAGAGAAC
ATATTGGTAAAGAGCTATAGTAGATGTGAAATTAAGGTCATTGACCTTGGCAGTAGCTGT
TTTGAGACCGACCATCTATGCTCATACGTTCAATCGCGATCTTACCGTGCACCTGAGGTT
ATACTGGGCCTACCTTATGACAAAAAGATAGATATATGGTCACTTGGATGTATTCTAGCA
GAACTTTGCACTGGGAATGTCCTTTTTCAAAACGATTCTCCTGCGACATTACTTGCACGT
GTGATGGGCATCATTGGATCCATAGAACAAGCTATGCTTGCACAGGGGCGTGATACTTAT
AAATACTTCACAAAGAATCACATGTTGTATGAAAGAAATCAGGAAAGCAGCAGGCTAGAA
TACTTGATTCCGAAGAAGACATCATTGCGGCACCGCTTGCCCATGGCCGATCAAGGTTTC
ATCGAGTTTGTTTCATACCTTCTCGAGGTGAATCCAAAGAAGCGCCCAAGCGCCTTGGAA
GCATTGAAACACCCGTGGCTTTCTTTTCCTTACGAGCCAATATCGTCATGACACGGCTGC
TGCTACTGGATCGTCATGTTTGCACCATATCGAATGCCTTAAACATCTGTCCTGGCACCT
GAAGCAAACACCATGAAGTTTTGATGGAAGATCAAGATGATGAAATCTGTTGTAGCATGG
GCCACCCCACGGAAACAAACGTTCCGAGTTCAAACATTCAAGCGCGATGTTGATTCAAGC
CAATTGCTGGGATGGTGGTCTTTTGCTACCCTGTGTACTAAAAATGCCCTGTGTTGTGAT
GTAATATAACTCTGGGTTTTGTCTATTGTCTGGCTGGCCCCAATATAACAGGCCATTTGG
TTAGAGGTACATTTTGAAACCCCATTTTTCGTCTAGGAATAGGGCTGTCATGTTGTACAT
GGTGTGATTATTATTGTCCAACCTTGTGGTGCCATGCTGCGCACGTCTATTTTTATGGTT
CTAAGTTAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_4614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51020.1	1116	1e-154	protein\|expressed protein
Brachypodium v1_2	Bradi1g10530.1	1111	1e-157
Arabidopsis v10	AT3G17750.1	1138	5e-145	Protein kinase superfamily protein \| chr3:6074228-6078428 FORWARD LENGTH=1138