barSeed - Barley Seed Development Database

Probe CUST_33771_PI390587928

Source Contig U35_4624

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33771_PI390587928	Hv_44K_v2	TCAATCGTCTTTCAAATCCGCCTGGTAAAATGTGATTTGTTCCTCTATGCCTCACTTGGT	717	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.595	1.629	1.683	0.871	0.361	0.273
Raw	37.792	63.572	53.232	44.927	4.928	4.174

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11621	969	3e-25	718 - 777	100	60 / 60	plus
Harvest35	U35_4624	969	3e-25	718 - 777	100	60 / 60	plus

Contig Sequence (969 bp)

>U35_4624 969 Hv_44K_v2
CATGCTGCAGCATTTACGGCAAAACCTGTATGGTTTAGTCACAGCACTAAAAAAGGTGGA
TACTCAGAAGATATGACCCTTGCTGCAATCGCTGGGCAACATAAGAGGCTGATAACTTCA
CCACCTGTTGCTGTGTTTACACACCCTCTTGCAAGTGATCTCAGCTTCTCCAGATACTGG
AATTATCTAAGGAAACAAACTTTTGTTCTTGAATCGTATGTTTCAAAGGTCAACTGGATA
ATGAACCGTGCACTGTTTGGTGTACATTTCTATTTGTCATGGGGATTTGTTTGTCCCTAT
GTTATGACTATGGTACATATTGCGACTACTCTTAGAGCACCATATAGCGCAATTGTAAAG
GAAGCAGATGAGTCGTCTTGTGGTCTGAAACTAGTGAGCTTCTTGTTAATATGCACTCTC
ACTGAACTCGTTTCGATGTGGAATTTGACGAGAGTTGAGATCCAACTCTGCAACATGTTA
TCTCCAGAAGGACCACAAGACTCCCTTCGTTCATATAACTGGGGGCTTGTGTTCGTTGCC
GTGTTAGTAGACAATTTCCTCTACCCGATATCTGCCATCCGGTCCCATTTCTCCCAATCA
ATCAATTGGTCTGGTATCAGGTACTACCTGAGAGATGGGAAAATAAGCAAGGTACGCAAT
GTAACCTACGCAATGTAACCTGATTTTTTTTCCCTTGTACCCTAAACAGTTTCTTTCTCA
ATCGTCTTTCAAATCCGCCTGGTAAAATGTGATTTGTTCCTCTATGCCTCACTTGGTTAT
ATTCCACAGATTGAAAGGGAGAACAGTTCGAAGTACACCGATCTCGGTGGGAAGCATCTC
TATGGCAAGAGGACATACCCTGCTGGAAAGTCGTTGCTCGGCTACCTGTCCATAAGCCTA
GCCCAATGGCACCAGCCGAAGAAGTATGATGTCTGAGAATGCCTAGTGGAATCCTGTCCT
CAATTTTGT

Homology of Contig U35_4624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67870.1	518	1e-140	protein\|expressed protein
Brachypodium v1_2	Bradi2g58060.1	518	3e-147
Arabidopsis v10	AT2G19880.2	520	9e-111	Nucleotide-diphospho-sugar transferases superfamily protein \| chr2:8581578-8585118 FORWARD LENGTH=520