barSeed - Barley Seed Development Database

Probe CUST_33770_PI390587928

Source Contig U35_4625

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33770_PI390587928	Hv_44K_v2	GAGTAGCCACTGCTAATTGTTTGCCCATGAATGTTTTGTAATGAATTAATCTATGAGTTC	1046	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.477	1.640	1.064	0.819	0.358	0.455
Raw	1129.872	1954.035	1105.864	1363.122	204.630	286.806

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368553	2134	2e-24	2029 - 2088	100	60 / 60	plus	ABC12767
MLOC	MLOC_5523.1	1915	2e-24	1790 - 1849	100	60 / 60	plus	ABC12767
JLOC1	JLOC1_3556.2	1437	8e-25	1293 - 1352	100	60 / 60	plus
JLOC1	JLOC1_3556.1	1797	8e-25	1653 - 1712	100	60 / 60	plus
Harvest21	ABC12767	1182	3e-25	1047 - 1106	100	60 / 60	plus	ABC12767
Harvest35	U35_4625	1198	3e-25	1047 - 1106	100	60 / 60	plus

Contig Sequence (1198 bp)

>U35_4625 1198 Hv_44K_v2
GGCTGCAGGCAGCAATTTTGATGGATTCTGGATCTCGAAGACCTGGAAGAGAGGAATTGG
TAACTTGAGTGTGGAAGACTTCTTGGACAGATCTCAGAATTTTGCCAGATCAGTAGGGAA
GATGGAGATGCAGAACATCTGTGAATGCCTAAAGGATACTGTTTCCAAATTGACTGATTT
CTTTAGGGGTAACATTGATGCACCAACACTGAAGATCCTCATTTTCGGGGCGTTAAATCA
GGATGTGCCAGTCAGCCACCCCAGTCCAAAACATGTGAAGAGTAAGAGGAAGAGGGACTT
GCGAGATGACCCTGGAAACAGTGAGAAGCAGCAAAAGAAAGGGAAGCACGCCGCACAACG
TGGCCATGCTGCTAACAGCACTGCTGCTATTTTACCAACTCCCACTGTATTTATGCCTCC
ACATGTGCATCAAGTAGGTTCTACCCAACCATTTAGTCAGGTTGTGCATCCGTCTCAGCT
TCCAATTCCTCCTCAGCTTGCCTACGGGTTGCCACAAGCACACTTTCATCCAACTCCTCA
TATACTAGGACAACCTTATGGTAGTTTAATCTACTCGACGGATCCTGGGATTCGACTGCA
GCAGCAAGCCCAGCATATGTTTGTTCCTTTGCCGGTCCACCAGCCAGTGATTAATAGGTC
GTTTCACCCCCATGGTTTCAACAGGGCGCATCAGACCCAGTATGATGACAATAGCTGGTT
ACCTTACGGAACCAATCCAAATTACAGGAGGGTATGACAAGTGCAGCAGCTTGAGTTGGG
CGGCGTAGCTAGCTTATCGGTGGGAAATTGTGGTGTTGATCTGTTGTAGAATGAAATGTG
CATTAGCATTCATGTAACAAGTAGTAGTTTCGTCCAAAGTGACAGCGAAAAGGAAACCGA
AAGCATTTCTATGTTGGTCTGCAGTGAGCAGATAGTAAGGTTATTCTAGACTTGGTAATT
GCTCAGTGTTGAAATATTTTTGGTTAGGAGCCTGGGTGAAGATTTAAGATGGCCAGGTAG
ATAGCACTGCAGCAAAGAACAAACTAGAGTAGCCACTGCTAATTGTTTGCCCATGAATGT
TTTGTAATGAATTAATCTATGAGTTCATATGAAGCAACTATTGTAATGAAGCTGCATCAG
CTTGATTGATTCTATAGCGGCCGCTCGAGCATGCTGAGGAGGGCCCAATTCGCCCTAT

Homology of Contig U35_4625 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44560.1	581	5e-65	protein\|expressed protein
Brachypodium v1_2	Bradi3g42980.1	571	1e-91
Arabidopsis v10	None