barSeed - Barley Seed Development Database

Probe CUST_3376_PI390587928

Source Contig U35_47804

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3376_PI390587928	Hv_44K_v2	TCATGATCGGCTACGCGCTGCCCGGCAAGCCCATCGCCAACCTGCTCTTCAAGATCTACG	424	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376249	2504	2e-24	1529 - 1588	100	60 / 60	plus	ABC14945
MLOC	MLOC_54985.1	1414	2e-24	1124 - 1183	100	60 / 60	minus	ABC14945
MLOC	MLOC_54983.14	2910	2e-24	2573 - 2632	100	60 / 60	minus	ABC14945
JLOC1	JLOC1_35439.1	2894	8e-25	282 - 341	100	60 / 60	plus
JLOC1	JLOC1_35437.1	5349	8e-25	4915 - 4974	100	60 / 60	minus
Harvest21	ABC49227	548	3e-25	425 - 484	100	60 / 60	plus
Harvest35	U35_47804	548	3e-25	425 - 484	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_47804 548 Hv_44K_v2
GGCGACTTCGACCTCAACGTCGCCGCCTATGACAGCTACGGCAAGCTCTACCTCAGCCCG
CTCTTCGCCATCTCCATCGGCTCCGGGTTCCTCCGCTTCTCCGCCACCATCGTGCACGTG
CTGCTCTTCCACGGCGCCGACATGTGGCGGCAGAGCCGGAGGGCCATCGGCGCCGCGGCC
AAGCTCGACGTGCACGCCAGGCTCATGCAGAGGTACAAGCAGGTGCCGCAGTGGTGGTTC
CTGGTGCTGCTGGCCGGGAGCATCGCCGTGTCGCTGCTCATGTGCTTCGTGTGGAAGGAG
CAGGTGCAGCTGCCATGGTGGGGGATGCTCTTCGCCTTCGCGCTCGCCTTCGTGGTCACC
CTCCCCATCGGCGTCATCCAGGCCACCACCAACCAGCAACCCGGGTACGACATCATCGCG
CAGTTCATGATCGGCTACGCGCTGCCCGGCAAGCCCATCGCCAACCTGCTCTTCAAGATC
TACGGNCCGGATCAGCACCGTGCACGCGCTGTCCTTCCTCGCCGACCTCAAGCTCGGACA
CTACATGA

Homology of Contig U35_47804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g54000.2	529	3e-96	protein\|oligopeptide transporter, putative, expressed
Brachypodium v1_2	Bradi1g08420.1	486	2e-80
Arabidopsis v10	AT4G16370.1	737	1e-82	\| Symbols: ATOPT3, OPT3 \| oligopeptide transporter \| chr4:9247514-9250071 REVERSE LENGTH=737