barSeed - Barley Seed Development Database

Probe CUST_33764_PI390587928

Source Contig U35_4631

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33764_PI390587928	Hv_44K_v2	GTCCACCTTTTTACTGCCGTCTGGCTCTCTGTGTTTCCTTGAAACATTTCAAGCTCACAT	573	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15674.4	541	2e-24	121 - 180	100	60 / 60	minus	ABC10223 ABC18851
MLOC	MLOC_15674.3	1158	2e-24	393 - 452	100	60 / 60	minus	ABC10223 ABC18851
MLOC	MLOC_15672.4	3408	2e-24	2298 - 2357	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
MLOC	MLOC_15672.2	3022	2e-24	2447 - 2506	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
MLOC	MLOC_15672.3	3017	2e-24	2442 - 2501	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
JLOC1	JLOC1_10761.2	2610	8e-25	2356 - 2415	100	60 / 60	minus
JLOC1	JLOC1_10761.1	2605	8e-25	2351 - 2410	100	60 / 60	minus
Harvest21	ABC10223	1031	3e-25	399 - 458	100	60 / 60	minus	ABC10223
Harvest35	U35_4631	1031	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (1031 bp)

>U35_4631 1031 Hv_44K_v2
TGCAGGACATTCGCACGAGGCAGAAGCTGTCGGGCGGGCTCGAGCCGCTGGACGCGCGCA
TCAAGGAGCTGACCTCGTCGCAGGGAGAGCTGCTGGCCAGGATCCAGAAGCTCAAACAGG
TATCGTATGTGGGCCGTCGGATAGCCCTGATAGCATGCATCGAAGGGCTCATGTGATGTG
AGAAGTTTGATTTTGACCTTGGCTCGAAGCCTGCGTTTTCAGGAGGTGCAGAATTGGCGC
TCCAATGTCGAGGCGCAGGTCAAGACCTGCCACAACGTGAGTAGCACTCCTCTATTTCTT
TTTAGTTTACTTCGCATATTAGGTTGGTTTTAAGTCAATAGGTTTTAAAATTTTGGCCAG
GTTTATAGAAAAATATATCAACGTTTACGATACAAAATCGAAAACACTAGATTCAAAACG
GGATATGCTTTCGTGTTAAACTTAGTTGGTATTGTACATGCTCATGATTTCATTGTGCTG
ACGGTTAATAAGTTACCTATATAGGAGCTTGTGGAGGTGAAGGAGGGACTTGCTTCTGAA
GTGCAGCACCTGAGATCCGTGTGTCTTCTTTCTGTCCACCTTTTTACTGCCGTCTGGCTC
TCTGTGTTTCCTTGAAACATTTCAAGCTCACATTGTGTTATTTGTTGCTTCAAGGACATC
AAAGAGATCAGGTCTGCCCTCCAGGAAGAGAAGGCGGGCTCGAAAACGGAGCAAACAGGG
CAGACACAAGAAGACCAAGTACTCAAGACTGATGATGAAAAGACGGAACAACAAACTGCG
GTGAAAGCATGAAAAATTTGCGATCCCTGATTCAAACAGAACTTGTGCAGGTGGATGCTC
AACTTAGTCATTTGGACCACCCAGAAAATTAGGCAAATACATAGTACTAGCACATTAGGT
CAGGAGGGGTAGATATGTATATGAACTGGCTTGCACATCGCGCTTGCTTGCCACATACTA
CCACTATGTCGGTATCAGCAAACTGGAGTGCAGAGGTTTCAAGACCCGTAAGAGTAAACA
TTATAACAGGA

Homology of Contig U35_4631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None