barSeed - Barley Seed Development Database

Probe CUST_33757_PI390587928

Source Contig U35_4638

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33757_PI390587928	Hv_44K_v2	TCATATCATCCAGCTTTTGCATCTGGGAAAATAAACTGGTTTGTGTTTCTCTGCAAAAAA	1771	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.915	1.849	1.213	0.873	0.426	0.420
Raw	1998.483	3005.289	1758.343	1971.016	336.271	360.647

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10701	1763	1e-23	1693 - 1752	98	59 / 60	plus	ABC10701
Harvest35	U35_4638	1842	3e-25	1772 - 1831	100	60 / 60	plus

Contig Sequence (1842 bp)

>U35_4638 1842 Hv_44K_v2
GTGCACCAGATCGAGCCCAGTCCAGAGGAAACCCTCCCATTTCAGTCCATCTCCCTTCGC
TTCCTCACTTAAACCCCACGCCGCACCCCTCGCCGCCGGCCGCCGCCACGCCCTCACGAT
GGCTCACCTCCGCCTCCTCCTTTCCCACTCGCGCTGCCATCCACATCCCCACCGCCTCCT
CCCGCTCTTCCGCTTCTGCACCTCCAACTCCGGCAACCCCCCACCGCCGCCCATCAAGCC
CGTCTCCTACGCCCCGAAGCCGAAGGCCCCACCCGAGGAGGCCCCCTCGCGGGAGACCCC
GAGCGCTAGCTCCGAGTGGCAGGACCGGCCACCCAGGAGATTTGACCAGCAGCCGCCGCG
GCAGTTTACGCGGGAAGAGGTGCGGTTCGTCAAGGACGCGGGGCCCGCGATCGCGCCGGT
GTCGTACCCGAGCAGGGTTGCGCCGCTTCCGGGAGACCGTCCAGCGGAAGAAGGGGCCGG
GGAAGTGGCGAATGAGCAGGATCTGCGCGGCGAAGCGGAGCGGATTGAGATGAATGCTGA
GCGGACGAGGAGGACCATCTTCGGAGTGCCGGTGGAGGAGGAAACGGTGCCGTACCCAAC
GCTGATACCCGTTGCGAAGCGGCCGCAGAAGGTCGCCATTGATCTCGTCGATGCACTCCG
CGAAATCAAGACCAGTGCAAATGAGAAGAAGCGGAATTTTACTGAAACAGTGGAAGCTCA
TGTGATGTTAGGTGTTGATCCACGTCGTGGTGACCAGATGGTTCGTGGCGCCATAACATT
GCCGCATGGCACTGGCAAGACTGTTAGGGTAGCAGTATTTGCGGAAGGGCCTGCAGCAGA
GGAAGCTAGGGCAGCTGGAGCAGATGTTGTTGGTGGCGACGAGCTGATTGAGGAGATTCG
CAAAGGAGGAGGCAAACTAAGTTTCGACAAGTGCATAGCAACCCCAATGTTCATGCCTCG
GCTTTCAAAGGTCGCTAGAATATTGGGTCCGCGTGGTTTGATGCCAAATCCTAAGTTAGG
TTCTGTGACCAATGATGTTTCTGGTGCTGTCAAAGCGGCAAAATCAGGTCGTGTTGATTT
CAAGATAGATAAAACTGCCATAGTGCATGTTGGCCTTGGAAAGGTCAATTTTTCTGAGGA
GAGTTTACGTGAAAATATTGGTGCTTTCGTAAATGCACTTTTACTTGCTAAGCCGGTGGG
CTTAAAGAAAACTTCAAAATATGTTGGATACGTGAAGAAGTTCACGCTGAGTAGCACAAT
GGGACCTGGATTTCCTGTTACTATACCATCACTATCGGCAGCTGCTGATGACTATAGCAA
GGTGCATGTGAGCTAAGTCAGTGTAAATCAAATCTGAATGAACCATTTTATTTTTGGGGT
ACTTGCAACCGGTTCCTTGCAAGTGGCTGGCCTATCTCAGTGGAGCATAGCGTTGGATGG
GTTGCTATTCTGACAAAAACTATCTGCAAACCTTATCTCGTTAAATGTCGCACGGTCACA
CAAAATTATGTGGTTTCTTTTGCTGGCCCACTCATGTCGTCATCCTCATACTCAGTAATT
TATTGTATGCAATCGCAATGTAATCTTGAGCTCATTACTAGAGAACATTTTTTCTTCTTT
TTTCTTGGCATAACTAGAAAAGACTGTAGTTGTAGGTCTGGCATTTGAGTGATCAATGGC
CACTAGGAACCAGTTTTTGCCGGGCTTATGTTACTATAGCTAGCGTGTTCGTTACAACTT
CTGCATATTTGTGTGATGCTGTTTGAAGTCCTCATATCATCCAGCTTTTGCATCTGGGAA
AATAAACTGGTTTGTGTTTCTCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35470.1	418	2e-175	protein\|L1P family of ribosomal proteins domain containing protein, expressed
Brachypodium v1_2	Bradi1g41010.2	406	0.0
Arabidopsis v10	AT2G42710.1	415	9e-95	Ribosomal protein L1p/L10e family \| chr2:17782352-17784830 FORWARD LENGTH=415