barSeed - Barley Seed Development Database

Probe CUST_33754_PI390587928

Source Contig U35_4641

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33754_PI390587928	Hv_44K_v2	CTGTCATTGTGCGTGTGCTTCAGGTCTGTGTCTTTTATACTATAGTTATGTGGTTGCCTG	1528	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364273	3533	3e-22	3400 - 3458	98	59 / 60	plus	ABC10694
MLOC	MLOC_4898.1	3125	3e-22	2974 - 3032	98	59 / 60	plus	ABC10694
Harvest21	ABC10694	1623	3e-25	1529 - 1588	100	60 / 60	plus	ABC10694
Harvest35	U35_4641	1623	3e-25	1529 - 1588	100	60 / 60	plus

Contig Sequence (1623 bp)

>U35_4641 1623 Hv_44K_v2
GAGCACTCCAGTGTTGGGGCATTGTCGACTTCAGTGCACGGCCATCTCACAACAAGCAGC
AACCGCTTGATGGGAACATGTTTATTAACTATATCGTCAGGAAGTGCTGTGACCTTGGCA
TTCAGATGAACAAGACAGCATGTTTTGTGCATCTATCAGAAATGTCAGTGCTATCGGATC
CACACCAACTGCACGAGGAGCTGAACAAAGCAAAGCAGGCTGCGGTGAAGAAGAACCAGA
AGCTGCAACTCCTCTTCTGCCCGATGTCTGAGCAGCATCATGGGTACAAGACACTGAAGC
TGATCTGCGAGACGCAGCTGGGGATCCAAACCCAGTGTTTCTTGAGCCACCTCGCAAACA
AAACCCAGGGCCAGGACCAGTACATGTCCAATCTTGCTCTCAAGATCAACGGCAAGCTCG
GGGGCATCAACACCCAGCTCCAGGACAAGCTCCCACTGGACAACGGTGTTCCTTACATGT
TCATAGGCGCAGACGTGAACCACCCATCACCTGGGAATGGGGAGAGCCCGTCGATAGCAG
CCGTGGTTGCGTCCATGAATAGGGGCGCCACCAAGTATGTGCCTAGAATCCGTGCCCAGC
CGCACCGCTGTGAGGTGATCAAGAACCTCGGTGAGATTGTCCAAGAGCTTATTGGTGTCT
TTGAGAAGAAGGCCGGCGTAAAGCCTCAGAGGATCATTTACTTCCGTGATGGCGTGAGTG
ATGGGCAGTTCGAGATGGTCCTTAACGAGGAGCTTGCGGACATGGAGAACGTGATCAAGG
TGAAGGGCTACTCTCCAACGATTACCGTTATTGTGGCCAAGAAGCGGCACCACACGCGGC
TGTTCCCCAAGGAGCACAATGAGCCGCTGCAGACGAAGAACGGCAATGTGCTCCCTGGCA
CGGTGGTGGACACCAGAATTGTTGACCCCGTGACGTACGACTTCTACCTGTGCAGCCACA
ACGGGCTGATTGGGACCAGCCGGCCGACGCACTACTACAACCTGATGGACGAGCATGGCT
ACGGGTCAGACGACCTGCAGAGGCTGGTGTACAACCTCTGCTTCGTGTTCGCGCGCTGCA
CCAAGCCCGTGTCGCTGGCGACGCCCGTCTACTACGCCGACCTGGCGGCGTACCGCGGCA
GGCTCTACTATGAGGGCATGCTGGCGTCCCAGCCCCAGGTGCGCAGCTCGTCGTCGTCAG
CCTCCTCCACAGCGGCGGGGGCTTGTGACTTCAGCAACTTCCCGACGCTGCACGTGGATC
TTCAGGACAACATGTTCTTCATCTGACGCCGGCTTCTCACCGGTGCCGCTTAGCGTCTTG
GTCCGGTAGAACATATATACAGACTGCTTCATATGGTCTGAACTTGGTCCGGTAGAACAT
ATATACAGACTGCTTCATATGGTCTGAACTTGGTCCGGTAGAACATATATACAGACTGCT
TCATATGGTCTGAACTTGGTCCGGTAGAACATGTACTCCGAACTGTTTCGTATGGTCTGA
ACTTTGAACTTGGAACGTATTGCTGGTTCTGTCATTGTGCGTGTGCTTCAGGTCTGTGTC
TTTTATACTATAGTTATGTGGTTGCCTGGCCNCTTGCCAGTCTGATGATATGCAAAGCCA
CAA

Homology of Contig U35_4641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52540.1	1035	0.0	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi5g21800.1	1028	0.0
Arabidopsis v10	AT1G31280.1	1014	9e-104	\| Symbols: AGO2 \| Argonaute family protein \| chr1:11181777-11185112 FORWARD LENGTH=1014