barSeed - Barley Seed Development Database

Probe CUST_33751_PI390587928

Source Contig U35_4644

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33751_PI390587928	Hv_44K_v2	GATTGTGTGCCATCTAAGTATACATCATCGTTTCATTTATGTTGTGATTGTTTTGTGTCC	1187	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62640.2	1335	3e-21	1282 - 1335	100	54 / 54	plus	ABC13128
JLOC1	JLOC1_41009.2	1465	3e-24	1354 - 1412	100	59 / 59	plus
JLOC1	JLOC1_41009.1	1395	3e-24	1284 - 1342	100	59 / 59	plus
Harvest35	U35_4644	1264	3e-25	1188 - 1247	100	60 / 60	plus

Contig Sequence (1264 bp)

>U35_4644 1264 Hv_44K_v2
CTCTCGAGCGCCTCCCCCTCCCCGACCGCCCCGCTCCGCCGACCCCACGCCGAAATCAAA
CCCCAACTCGTCCGCTCCGGTGATCCGCCGCCCCAGGAGGCGAAGCCCCACGACGCATCC
GCGCGGAGCCTCCGCCCGCCATGACTGAGTATTGGGTGAGCCAAGGAAACAAATGGTGCG
ACTTGTGCAAAATCTTTATATCTAACAATCCGTTCAGCATCAGGACACATGAACTCGGCA
AACGCCACAAGGACAATGTCACCCAAAGATTGTCTACGATGCAAAAGGATGGCGCTGCTA
AGGAAAAGGAGCAGCAGCAAGCAGCTAAAGCCCTCCAGCTGATAGAGGCTAAAGCTAAAA
AGAGTTACCAAAAAGATTTGGAGAATAACCAGAGAAACACCGATGGTGACAGTTCTGCAG
CACCTGGAGAAGGATGGGTATTTGACTCAACTTCAGGATATTATTATGATAAGTCTACTG
GACTTTACTACGACTCGAACTCTGGTTTCTATTATTCCGACGGATTAGGCAAATGGGTCA
CCCAGGAAGAGGCATACAAGTGGGCGGAAACCTCAGAAACTAATGTTGCCCAATCCTCGA
CCTCACAACCAAAACCGACTGGTGGAAGCGGGCCTGTCCCTGGTATTAAAGGAGGGCCAG
CCCCAGGTGTGGTTGTCACGAAACAACTGAACCCGATGAGACCTGTGAAGGGCGCTCCGT
CAGCCCTTGCCGCTAACAAGCGAAAAAGAGAGGACACCAAGAAGCCCAAGGTGGTTTCCA
AGGAGGAGGAGGCGGCACTCAGAGCACGGGAAGCAGCGAGGAAAAGAGTGGAGGACAGGG
AGAAGCCTCTCATGGGATTATACAAGACTTACTGAGGCGCCAATGCTCCCAAGCTCAATG
GGTGGTGCGCCCAGTTGCGCCAAAACCGTGGTAATGCCAATGGATGATATTGTTCTGAAA
GAAAAACGGGGAAGACTAGCGCCGAGCCCCGAGCTGCTCTTCAGCGTCAGTGACACATGT
ATGCATTGTACAATACCTCGTCAAAAGTTCCTAAATCGGCCTTTGCGCAAAACATGTAAA
TGGACAGCTCATCCATTATCATCTCTCTTGTTGTTTCTTCCCAGTGGATTGGATTGCACA
TGATATAATGCCGAGAACTGTAGCCAATGCGAGCGCCGCTTGAGATAGATTGTGTGCCAT
CTAAGTATACATCATCGTTTCATTTATGTTGTGATTGTTTTGTGTCCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_4644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11170.1	244	7e-103	protein\|formin-binding protein-related, putative, expressed
Brachypodium v1_2	Bradi1g45900.1	244	3e-111
Arabidopsis v10	AT1G49590.1	242	2e-51	C2H2 and C2HC zinc fingers superfamily protein \| chr1:18354997-18356409 FORWARD LENGTH=242