barSeed - Barley Seed Development Database

Probe CUST_33748_PI390587928

Source Contig U35_4647

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33748_PI390587928	Hv_44K_v2	CTGGATGTACTTTGTTACTCAGTCATGTATAAACACACCATCTTCAAGGTTTCTAGAAAA	1194	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.513	0.413	0.816	2.013	1.654	1.352
Raw	69.162	77.832	152.817	570.810	170.740	151.463

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65780.2	2175	6e-24	2102 - 2160	100	59 / 59	plus	ABC10888 ABC38207
JLOC1	JLOC1_43304.3	1407	3e-24	1299 - 1357	100	59 / 59	plus
JLOC1	JLOC1_43304.2	1596	3e-24	1505 - 1563	100	59 / 59	plus
JLOC1	JLOC1_43304.1	1502	3e-24	1394 - 1452	100	59 / 59	plus
Harvest21	ABC10888	1267	3e-25	1195 - 1254	100	60 / 60	plus	ABC10888
Harvest35	U35_4647	1267	3e-25	1195 - 1254	100	60 / 60	plus

Contig Sequence (1267 bp)

>U35_4647 1267 Hv_44K_v2
GCTAGGCTCTATCACTCTATCCTCTTCCCCCGCCCGCCCTCTGCCGGCCGCCTCCCCTGC
CCCCTCTCCGACCGCCACTCCGATCCGCTGGCCTCCTCTGCTCCACCTGGAAATTTTCCA
GCCCAAACAAAGGCTCATCACCGGAACAGGACTTTAAATATATGGCCTTTAAGACTCTGC
AAGTTCCATCCAGTTTAGCAAGGCCAGACAGCTGCAGTTTCACTCCCTCCAACCCCAAGT
CTTATTGCTATCACCCAAAACCTCACTCAAGACCGCAAGCAAGAATCGCCACGAAGAATC
GCCTCCACAGTTCACCAGTACTGAAATGCAGAGCCAATCCGCACGGCTGCGTCGACGATG
TTGTCCAGTCCCGTCAGGATCATCAGACTACTGAGATCCCCATAGTCCTCCACCAGTCGG
TCGTTTTCCCTGGCCAGACGCTGCAGCTGCAGACGGTTGAGTTCAGATACCGCATCATGA
TGCACACACTACTGCTCCAGGAACGCCTCAGCTTTGGTATCATCTACTCCGGCAGGGAAG
ATGATAGTAGTAGGATGGCCGATGTTGGATGCATGGTCCATGTCGTCGAGTGCGACAAGC
TCGTCGATGACCGCTTCTTCCTGACCTGCGTCGGCGGAGACCGGTTCCGTGTCCTGGAGG
TCGTCAGAACAAAGCCCTATGTCATCGCAAGAATTCAGGTACTGACTGACAGAGACTCGC
CCGATTCAAGTAACCTGGGGTGCCTGATGCAGCAGGTGGAAGGGCACCTGAAGAACGTGA
CAATGCTTTCAGACAAGCTCAACTGGAAACTAGTGGTAGACCATCAGGCTAGGCAGCTCA
GCAGGATGCATTCCCCGGAGTCTTTCTCCTTAGTCGTGGCTCGGTTGTTTGTCGAAGACC
GTTCAGAACAGCAGTGGTTGCTCGGGTTAGACGACACAGCGCAGCGATTGGTGAGAGAAG
GGCGGTACCTTGAACAGAGGAGCAAGTACCTGGCGGCCATAGCGGCGATCAGGGACGCCT
TTGGGCAACTGTCCTGCAATGAGAAGCAGTAGCAGGCCTGATGCATTGGAGCTGCCATTC
TGGTAATAGATATGTACTACTTGGCTACATTGTAGTTTAATATTTTGCTTCTTTCTAATG
TGTATATATTGTATATCCTTGAATGTTTGTTTTGTGGTGAAACTTCACAAACTTCTGGAT
GTACTTTGTTACTCAGTCATGTATAAACACACCATCTTCAAGGTTTCTAGAAAAAAAAAA
AAAAAAA

Homology of Contig U35_4647 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g29540.2	306	5e-85	protein\|ATP-dependent protease, putative, expressed
Brachypodium v1_2	Bradi1g60130.1	295	2e-130
Arabidopsis v10	None