barSeed - Barley Seed Development Database

Probe CUST_33737_PI390587928

Source Contig U35_4658

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33737_PI390587928	Hv_44K_v2	TGCCAGTTTTGTTAATTTCGTGTTCTGTTGATCATGTCCCTGGCCGTGACCATGTTCAAA	1400	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372941	2980	7e-23	2886 - 2942	100	57 / 57	plus	ABC11654
MLOC	MLOC_18231.1	2878	7e-23	1942 - 1998	100	57 / 57	plus	ABC11654
JLOC1	JLOC1_12610.1	2161	4e-23	1944 - 2000	100	57 / 57	plus
Harvest35	U35_4658	1474	3e-25	1401 - 1460	100	60 / 60	plus

Contig Sequence (1474 bp)

>U35_4658 1474 Hv_44K_v2
GAGCAGTATACCTGGGAGGTGTTTGATCCATGCACCGTGATCACAGTGGTGGTGTTCGAC
AATACACAGATTGGGAGCAAGAACGGTGATGCCCGGGATGAAAGCATTGGCAAGGTCAGA
ATTCGTCTCTCGACGCTGGAGACTGACCGGGTGTACACCCATTTCTACCCTTTGCTAGCT
CTCAAGCCAAGCGGTCTGAAGAAGACCGGTGAGCTGCATTTGGCCGTGCGGTTTACGTGC
ACCGCGTGGGTGAACATGATGGCAATGTATGGCCGTCCCCTGCTGCCGAAGATGCACTAC
TCACAACCAATATCAGTGATGCAGTTGGACTACCTGAGGCACCAGGCGATGCAGATTGTT
TCGGCGAGGCTGAGCCGTGCCGAGCCTCCTCTCCGCAGGGAGGTTGTGGAGTACACGCTC
GATGTGGGCTCACACATGTTTAGTCTCCGGCGCAGCAAGGCCAACTTCTATCGCATCACT
TCGCTGTTCTGTGGTTTTGCCTCGATGGCCAAGTGGTATGATGGCATCAGGAGCTGGCGA
AACCCGATCACAACAATGCTGGTGCACATGTTGTTCCTGATACTGATCTGCTACCCGGAG
CTCATCCTGCCCACCATCTTCCTCTACATGTTTATGATCGGAATCTGGAACTATCGTTAC
AGGTCAAGGCACCCACCACACATGGATACCAAGCTATCACAGGCTGAGTTTACGCACCCT
GATGAGCTCGATGAGGAGTTTGACACATTCCCATCCAACAGACCGGCTGACATTGTGAGG
TTGCGCTACGACAGGCTGAGGAGTGTCGGAGGTCGTGTGCAGACGGTGGTCGGGGACCTT
GCGACACAAGGCGAGAGAGCTCATGCTCTGCTGAGCTGGAGGGACCCTCGCGCCACCGCC
ATCTTCATATTCCTGTCCCTGGTCGTGGCCATCGTGCTGTACGTGACGCCGTTCCAGGTT
TTGCTGGTCATCACTATGCTCTACTTGCTGCGCCATCCCCGGTTCCGCAGCAGGATGCCC
TCTGTCCCGTTCAACTTCTACAGAAGATTGCCTGCCAAGTCCGATTCGCTCATTTGAGGC
CAGAGCACCCGACGGAAGATAAAATGGGGGAACCCTGTAACATTGTCTCCCTCTCTCATT
CTGTTCCTTCTGGTAAGCTTCAGATCAGATGTGAATATACTTGGTGAGTTGATTAATTAG
AGGCAGTTTGGTGGCCCTGTAATAAGGTGTCGGTTTTATATGTTTTACTGTCTGCTTATA
GTTAGGCAGATAGCGAAGGGAATGACCAGATAAGATCCCTTCATAGTTTTGGATGAACAT
TGTTGGCTCTGGGGTTTCTGGCGTAGAGCAGTGGGGTGGGGCACATGATCAGTTCCATTG
TGTTATGTTAAATGTATTGGTGCCAGTTTTGTTAATTTCGTGTTCTGTTGATCATGTCCC
TGGCCGTGACCATGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4658 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g35480.1	805	protein\|anthranilate phosphoribosyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g24410.1	805
Arabidopsis v10	AT1G22610.1	1029	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr1:7994478-7997567 FORWARD LENGTH=1029