barSeed - Barley Seed Development Database

Probe CUST_33731_PI390587928

Source Contig U35_48034

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33731_PI390587928	Hv_44K_v2	TCCGAAGACTGACCAATTTCTGGTAAGTGAGTAGTCAGCATCCGAAGAATGACTGCAGTT	19	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65093.1	3712	2e-24	495 - 554	100	60 / 60	minus	ABC49776
JLOC1	JLOC1_42807.1	3477	8e-25	267 - 326	100	60 / 60	minus
Harvest21	ABC49776	659	3e-25	20 - 79	100	60 / 60	minus	ABC49776
Harvest35	U35_48034	659	3e-25	20 - 79	100	60 / 60	minus

Contig Sequence (659 bp)

>U35_48034 659 Hv_44K_v2
TTTCTTGGACTCCCGGGTGAACTGCAGTCATTCTTCGGATGCTGACTACTCACTTACCAG
AAATTGGTCAGTCTTCGGATGCTGACTACTCACTTACTCAGTCCAGAGAAAAGGGAGAAA
ATCATTACACACCATGTTACCACTGTCGCCTCTCCATCGTTGTTTGGATATCTACTAACA
ATGTTAAGATGTCATGGTTGTATATTTTTGCAATTAAGTTGTGTTTTTGCTCATTCTACA
CAACCTCTGAACAATGTCTAACCCTTCTCCCCGATACACTGGTCCTGGAAATCTCACATG
CTTTATGAACAAGAGCAAACAATCCATCTATTAAGTTTCATGAAGGGAGAACCATTCACC
AGAAGTCGCCACAAGAACAAGATCCACCTCTGAAATGGTGGAATCTGTTGGCGTCGCGGA
CCACGATTTCCCTCTCGAACAGCTTCGACACTAGCTTGGTGAACTCATGGCAGTCGCCGC
AAACTCTGAGGTTCTTGGCTATCCTTAGAGGCGTACCTGGACGTGTGCTGATCAAACCAA
ACGCAATGGCAAGCCTCTCGCTGTGCCTGTGCAGCACATCTACCTTCTCTTCTTCACTAA
CGTCGTGCAGAACAAACCTCGTATCCTCAATATACCCGCCTTCTTTTCTCAGTTTTTCT

Homology of Contig U35_48034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39410.1	951	8e-56	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi5g12970.1	941	3e-57
Arabidopsis v10	None