barSeed - Barley Seed Development Database

Probe CUST_33730_PI390587928

Source Contig U35_48036

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33730_PI390587928	Hv_44K_v2	AAGCCAGCCACCTTTACCGTCTCATTATTTTCAAGTACCCGGACTATATTGAATGCCTAT	0	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.296	1.214	1.076	0.855	0.497	0.423
Raw	1813.823	2571.098	2053.403	2463.516	527.066	490.735

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248246.1	3577	3e-22	1688 - 1746	98	59 / 60	plus	ABC29297 ABC49785
MLOC	MLOC_73455.1	2181	3e-22	526 - 584	98	59 / 60	minus	ABC49785
JLOC1	JLOC1_48905.1	1293	1e-22	709 - 767	98	59 / 60	plus
Harvest21	ABC49785	697	3e-25	1 - 60	100	60 / 60	minus	ABC49785
Harvest35	U35_48036	697	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (697 bp)

>U35_48036 697 Hv_44K_v2
ATAGGCATTCAATATAGTCCGGGTACTTGAAAATAATGAGACGGTAAAGGTGGCTGGCTT
TCACAGTATCATGAAGCTCTTCCAATAATCTTGCATAGTTAAACAATGTGGTGACTTTAT
CGCAGGGTAATTCAAGAGGTATGTTTTCTTCAAGTTGGTGAAACAAACTCTGATCCCTGT
ATTGCACACTCCAGTTTACCATGGAACTACCAGCAGTCCCATCCATAATTGAAACCCAGA
TACCGTCCCCTAGAGCTTCCTTAAAACTTTGCTCAGCCAACTCGAACTCTGCCTTCTCAA
AATAAAGAAGTCCAATTCCATTGAGCAATTCAACTGGTACTTTCTCTCCTGCCTTCCTTA
GGAGAATACATGCTGTCTTTAAGTATTCCATGGCAGCAGCCCAATCAGATTCTACCAACA
ATTCACCAAGTTCAACAAATGCCTGGTGATCTTTTGGATCAATCCGTGTAACTTTCTTAA
AGGTCTCTATGGCTTTGTCATTCTCACCCAAATTTGAATAGATGTTCCCAATAGCCTTCA
AACTTTCACAATTTTCAGGGTGTACCTCCAGCACTTTCTCAAAGCTAGCTAAGGAACGTT
TGAAGTCACCAAATTTTAATTGTATTTGACCAAGGCCAACAAATGGCAACACAAAGTCTT
GCGGTTTATTGACTTCTTTGACAGATGCTATATAATA

Homology of Contig U35_48036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29360.1	1070	1e-126	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g12240.1	1065	2e-142
Arabidopsis v10	AT2G06210.1	1091	3e-79	\| Symbols: ELF8, VIP6 \| binding \| chr2:2429108-2436588 REVERSE LENGTH=1091