- Probe CUST_33727_PI390587928
- Source Contig U35_24080
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33727_PI390587928 | Hv_44K_v2 | ATTGTCTCATGTAGACCAAATCAGAGATTATATTGAGCATACGATATGCGGCATATTCAA | 603 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.757 | 1.388 | 1.105 | 0.859 | 0.318 | 0.405 |
| Raw | 862.099 | 1060.141 | 737.979 | 895.556 | 119.720 | 164.195 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_68085.4 | 1659 | 7e-23 | 1580 - 1639 | 98 | 59 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.7 | 1980 | 7e-23 | 1579 - 1638 | 98 | 59 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.1 | 1792 | 7e-23 | 1712 - 1771 | 98 | 59 / 60 | plus | ABC18974 |
| MLOC | MLOC_68085.2 | 1804 | 7e-23 | 1724 - 1783 | 98 | 59 / 60 | plus | ABC18974 |
| JLOC1 | JLOC1_45014.7 | 1842 | 4e-23 | 1635 - 1694 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45014.6 | 1849 | 4e-23 | 1642 - 1701 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45014.5 | 1838 | 4e-23 | 1631 - 1690 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45014.4 | 1899 | 4e-23 | 1692 - 1751 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45014.3 | 1884 | 4e-23 | 1677 - 1736 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45014.2 | 1923 | 4e-23 | 1716 - 1775 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_45014.1 | 1841 | 4e-23 | 1634 - 1693 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC18974 | 666 | 3e-25 | 604 - 663 | 100 | 60 / 60 | plus | ABC18974 |
| Harvest35 | U35_24080 | 666 | 3e-25 | 604 - 663 | 100 | 60 / 60 | plus |
Contig Sequence (666 bp)
>U35_24080 666 Hv_44K_v2 CACCATCGTCTTCTTGAGCACGAGGAGCTGATATATGGGTCAGCCGAGCAAGTTTTGGTT GATGCTGAAGAGGTGATGTACATTGTGAAAGAATTGTGGCGTGGCCGCAGTGCTAGGGAC CAAAACATGAAGGATACTGGCCGGAAAATGTGGAGATCTGTCAACGAACTGATGCTTGTT CGGTGGGACAAAACGAAGCCCGCTGGTGTGTCAAACTTAATACTTCTCAAGTTCAGTGAG GCGGATGCACATGAATCCACCACGCTTGATCAGCTAAAAGATGAAGAACCTGAATTCTAC GCCATGGTTTCACGTGTTCTGAAACGAGCCGAAACGGAGTTTGCTTTATGAGCTGGTCAC CGATGTTACTGGATTTCTACGATTGCTATACCGTCATAAGCCGTGCAATGCTACTGGACT AGTCAGGTAGGTTTCAGTTTTGCATGGTCTGATCTTGTGTGATAGTGACGAGGAGCAAGT AGATGATGCACACTTCCCTGAATTTTTGTTTTGGCCATAGAACTAGGACTTGTTGGTGAT GCTTTGATTTCTCTGGAAGGATCCTCCTGTAATCGTCTCCCCGGGATTTTTGATGCGTTT GAGATTGTCTCATGTAGACCAAATCAGAGATTATATTGAGCATACGATATGCGGCATATT CAAATG
Homology of Contig U35_24080 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g14040.1 | 459 | 8e-69 | protein|ThiF family domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g44307.2 | 462 | 9e-66 | |
| Arabidopsis v10 | None |