barSeed - Barley Seed Development Database

Probe CUST_33723_PI390587928

Source Contig U35_24086

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33723_PI390587928	Hv_44K_v2	TGCTACTCTTAGGAAAAGCCACTATTGATGAAGCTCGCAGTCTCTTATACTGGTTGCAGG	705	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58610.4	2268	2e-24	629 - 688	100	60 / 60	plus	ABC36667
MLOC	MLOC_58610.3	1565	2e-24	711 - 770	100	60 / 60	plus	None
MLOC	MLOC_58610.5	2234	2e-24	601 - 660	100	60 / 60	plus	ABC36667
MLOC	MLOC_58610.1	1578	2e-24	709 - 768	100	60 / 60	plus	None
MLOC	MLOC_58610.2	1635	2e-24	778 - 837	100	60 / 60	plus	None
JLOC1	JLOC1_38096.3	2381	8e-25	741 - 800	100	60 / 60	plus
JLOC1	JLOC1_38096.2	2352	8e-25	712 - 771	100	60 / 60	plus
JLOC1	JLOC1_38096.1	2266	8e-25	626 - 685	100	60 / 60	plus
Harvest21	ABC21876	774	6e-22	706 - 765	97	58 / 60	plus
Harvest35	U35_24086	1028	3e-25	706 - 765	100	60 / 60	plus

Contig Sequence (1028 bp)

>U35_24086 1028 Hv_44K_v2
GACTCGTTCCAAATCTCCAGCCTCCGTCCCACAATCCGCACCCGGCGACAATCCCCACGC
CAGCGATCCCCGCGCCGCCTTCCTCGCGCCGCCGCGGATCCAACGAGGCATTTGTCGGTG
TTTCTGGTTGTAATTTGTGGTCAAGTGGAGTAATCAACTTTAATCAGACATTCTTGAATA
TGGTATCCGTGAATGTTGGGTTAGTACATTATGTATTGGACCATATATATGGGACTCTCC
TTCATCGCACGAAATTAGGAACACCATTTTTCTCAAAGGGATGGGGAGGTACCAAACTTG
ATTTGTTAGAGAGGATGGTGAAGCAGCTTTTCCCGGAAGCGCCTTGCCAGAGCTGGCCAC
CAACTGCTGTGCAGCCTAAATGGAAAACAGTTTGGGAGACAAAGAACTCTTGTCTGCGAG
AGGGTGTTTTCCGGACAACATGTGATGAGAGACTAATTGATGCATTGCCTCCTGAGAGTC
ACAATGCAAGAGTTGCTTTTCTTACGCCCAAGGATGTCTCACCAGAGAAGATGGCTTGCG
TGGTCCATTTGGCAGGCACCGGTGATCACTCATTTGAGAGAAGGCTACGGCTTGGCGGAC
CTCTTTTGAAGGACAATATTGCAACCATGGTTCTTGAGAGCCCCTATTATGGACAACGAC
GTCCTAGCATGCAGCATGGGGCCAAGCTTCAATGTGTGAGTGACTTGCTACTCTTAGGAA
AAGCCACTATTGATGAAGCTCGCAGTCTCTTATACTGGTTGCAGGCTGAGGCTGGTTATG
GCAAGATGGGCATATGTGGGCTCAGCATGGGTGGCGTACATGCTGCAATGGTAGGATCCT
TGCATCCTACGCCAATTGCCACACTACCATTTCTTGCTCCACATTCTGCTGTGGTACCTT
TCTGTGAAGGACTTTACAGACATGCCACAGCTTGGGAAGCACTGAGAGAAGATGCAGCAG
CATTAGCTAAAGATGCAACTTCTTTGTCCGTCAGAGATAGCACTGACCGTAATCTGTCTT
TTACTTGC

Homology of Contig U35_24086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10160.1	367	0.0	protein\|AGAP003371-PA, putative, expressed
Brachypodium v1_2	Bradi3g07040.2	367	0.0
Arabidopsis v10	AT3G12150.1	363	1e-139	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). \| chr3:3876688-3878621 REVERSE LENGTH=363