barSeed - Barley Seed Development Database

Probe CUST_33718_PI390587928

Source Contig U35_50355

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33718_PI390587928	Hv_44K_v2	AAGTCAAGCGAGCATAGCACATTGATATGCTGAGTTATTTGCACTTCTCCTAACTTGAAT	540	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.634	1.541	1.082	0.867	0.293	0.294
Raw	1449.307	2148.036	1307.243	1675.667	195.838	216.998

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38254.1	1249	8e-25	1031 - 1090	100	60 / 60	plus
Harvest21	ABC01170	1083	3e-25	1021 - 1080	100	60 / 60	plus	ABC01170
Harvest35	U35_50355	603	3e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_14008	1081	8e-21	1030 - 1081	100	52 / 52	plus

Contig Sequence (603 bp)

>U35_50355 603 Hv_44K_v2
CGAGGCTGCGCTCGCCAGGCTGAAGGCGTTCGAGGGCGTCCCGCCGCCTTATGATCGCAC
CAAGCGTATGGTCATCCCCGACGCGCTCAAGGTTCTGAGGCTGCAGCCGGGTCATAAGTA
CTGCCTTCTCGGCGAGCTTTCCAAGGAGGTCGGGTGGAACTACCATGAAACTATCAAGGA
ACTGGAGGAGAAGAGGAAGGAGAAGGCCAAGGTCTCTTACGACAGGAGGAAGCAACTGGC
CAAGCTGCGCGTCAAGGCTGAGAAGGCTGCAGAGGAGAAGCTGGGTTCTCAGTTGGACAT
CCTGGCACCAATCAAGTACTAGCCTGCTGAGCAATCATGCATCGTCTATTTTGCTGGATA
ATGGTCGTTATTGTTTACGTTAGTAGCCTGAGAGTGTCGATGAGGTTTCAAACCTATGAG
TATCTATACAATTCCAATCTTTGTAGCAAATGGATTGTTTGGTATTGTTGTTTCCCCCCC
ATGAGGTTTCAAGATGTTGCTGTTTCCTCCCATAACTTCTTTTGCATCCAGCTCTTAGAC
AAGTCAAGCGAGCATAGCACATTGATATGCTGAGTTATTTGCACTTCTCCTAACTTGAAT
CGA

Homology of Contig U35_50355 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g54890.3	116	3e-53	protein\|ribosomal protein L13, putative, expressed
Brachypodium v1_2	Bradi1g59280.1	207	1e-51
Arabidopsis v10	None