barSeed - Barley Seed Development Database

Probe CUST_33712_PI390587928

Source Contig U35_50359

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33712_PI390587928	Hv_44K_v2	AGTTCATCAGCACAGTGCAGCCTTTGTTGAATCAGTTCATCAATATATGACTCTGCACCC	531	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355532	1088	2e-24	967 - 1026	100	60 / 60	plus	ABC08433
MLOC	AK251541.1	1049	2e-24	970 - 1029	100	60 / 60	plus	ABC08433
JLOC1	JLOC1_47508.1	1130	8e-25	907 - 966	100	60 / 60	plus
Harvest21	ABC52463	595	3e-25	532 - 591	100	60 / 60	plus
Harvest35	U35_50359	595	3e-25	532 - 591	100	60 / 60	plus

Contig Sequence (595 bp)

>U35_50359 595 Hv_44K_v2
CCGCACGGATTATGATCCTGGAAGAGGTGGCTATGGCAAGATGGTTCAGAAAGAGCTAGA
AGCACAAAGAGAATTAGTTGACTATGGTGTAGGTTTTCAAACGAATGCTCCACCGCAGTT
ATTCGACTCCAGACAGGTTGAGCCTAACTATTTACCAAAAACATCTACACTTTCCATTTA
AATATGCAGTTGATAGAGCTGACAGGAAGAGAGGATATGGTGACCGGAATGACAGAGGAG
ATTACCAACGGAGACGATCAGCACCAGATATGGCCAGGAGAGCAACTGACTCGGATTCTA
AGAGAGATGCTAATCAAGAGCCTGAAAAGAATCCCAGGTTTCGGGAGAAAGGTGATTCTG
ATGATGAAGACGAGGACTATGATAAGAAACGCCGGCGCTGAACATGAGAAGCAAATTGCT
GCCATATTCAAATGCCCAATGACTACAATAGTAGTATTATCTATCTATCCTGTATGCCAT
ATGACTTGATTTTCCCTTGAGCCATTCACATTTTGTCTGCGTTTTAGAATCAGTTCATCA
GCACAGTGCAGCCTTTGTTGAATCAGTTCATCAATATATGACTCTGCACCCCCTG

Homology of Contig U35_50359 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None