barSeed - Barley Seed Development Database

Probe CUST_33710_PI390587928

Source Contig U35_48040

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33710_PI390587928	Hv_44K_v2	GGGATATGGTTTGTATAGGATTAAGCAAGCGGTTTTGTACAAGAGTGTGTATGTATAAAT	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364565	2880	3e-22	2780 - 2838	98	59 / 60	plus	ABC17624 ABC49799
JLOC1	JLOC1_49752.1	2493	1e-22	1962 - 2020	98	59 / 60	plus
Harvest21	ABC49799	541	3e-25	9 - 68	100	60 / 60	minus	ABC49799
Harvest35	U35_48040	541	3e-25	9 - 68	100	60 / 60	minus
Harvest35	U35_24562	807	5e-23	83 - 141	98	59 / 60	minus

Contig Sequence (541 bp)

>U35_48040 541 Hv_44K_v2
CCGAATATATTTATACATACACACTCTTGTACAAAACCGCTTGCTTAATCCTATACAAAC
CATATCCCGAACACGCAGCAAGCTGCAGTCATGAGTCGTGACATGGTGAAACTGCTGTTC
AACCTCAGTATCCTGCCAGACCAAGGATGAAAGGTTCCAGAACTTGCATCCATGATCCAT
ATTCCTAACTAGGACTTGTTGTCCATGCCAAAAATCACTGACCCTAGTGTTGGCAGCAAG
ACTGTGAGAGCTGCAACTCCGACAACCTTGAGGGGCAATCCAGTGGCCACCAGATCCTTG
ATGGTAATGTGGCCAGTGCTGAAGCCGACGACATTCGACGGCGACCCGGTGGGAAACAAG
TACGACAGCTGGGCCCCGATCGCGCCGGAGATCATGAGAAGCGCGGGGTGCACCTCGATG
GACCTGGCCAGCTCAGCAAACAGAGGCAGCACCAGCGTGGTGGTCGAGTCGTCGGACATG
AACTCCGTGATGACCCCGCTAAAAACGCAGGCCACGGGCACGATCACCAGCGTCGGCGCG
C

Homology of Contig U35_48040 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39370.1	549	1e-62	protein\|citrate transporter, putative, expressed
Brachypodium v1_2	Bradi3g39800.1	560	2e-61
Arabidopsis v10	None