barSeed - Barley Seed Development Database

Probe CUST_3370_PI390587928

Source Contig U35_47809

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3370_PI390587928	Hv_44K_v2	ATTTCAGAGATCTGGTGCAGAAGGTCCCAGATGGTTGCATTTTTACCATCGTCTCTGACT	250	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38604.1	1554	2e-24	887 - 946	100	60 / 60	minus	None
JLOC1	JLOC1_25119.1	1548	8e-25	601 - 660	100	60 / 60	plus
Harvest21	ABC49236	469	3e-25	251 - 310	100	60 / 60	plus
Harvest35	U35_47809	469	3e-25	251 - 310	100	60 / 60	plus
Harvest35	U35_27568	435	3e-25	91 - 150	100	60 / 60	plus

Contig Sequence (469 bp)

>U35_47809 469 Hv_44K_v2
GACCGGTTCGGCTTCGACGAGGAGGACATCACCGTCCTCCTCGACCGCGGCTCCTCCGGG
CCGCAGCCCACCGGCGCCAACATCCGCCACGCGCTGGCCAAGCTCGTCGGGGACGCGCGC
CCCGGGGACTTCCTCTTCTTCCACTACAGCGGCCACGGCACGCGGCTGCCGGCCGAGACC
GGGCAGGACGACGACACCGGGTACGACGAGTGCATCGTGCCCAGCGACATGAATCTCATC
ACAGATCAAGATTTCAGAGATCTGGTGCAGAAGGTCCCAGATGGTTGCATTTTTACCATC
GTCTCTGACTCATGCCACAGTGGTGGCCTACTGGACAAGGCAAAGGAACAGATAGGCAAC
AGCACCAGGCAGAATCAGACCCAGTCTCGTGAACCCGAAGAGCGATCTAGTTCTGGCAGC
GGCTTCCGGTCCTTCCTCAAAGAAACCGTTCGTGACGTATTTGAGTCTC

Homology of Contig U35_47809 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g58580.1	418	4e-85	protein\|ICE-like protease p20 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g52470.1	429	9e-86
Arabidopsis v10	AT1G79340.1	418	2e-58	\| Symbols: AtMC4, MC4 \| metacaspase 4 \| chr1:29842849-29844368 FORWARD LENGTH=418