- Probe CUST_33709_PI390587928
- Source Contig U35_48042
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33709_PI390587928 | Hv_44K_v2 | GCCTGTTTGGGACTACACTACATAAAATTCAGTTTCGTTTCGTCAAATTCATTTTGAAAC | 45 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.288 | 0.414 | 0.697 | 2.234 | 2.676 | 2.586 |
| Raw | 14.679 | 34.653 | 49.377 | 240.195 | 105.553 | 109.800 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3793.3 | 1887 | 2e-24 | 1727 - 1786 | 100 | 60 / 60 | plus | ABC11714 ABC20187 ABC49802 ABC49803 |
| MLOC | MLOC_3793.2 | 2074 | 2e-24 | 1897 - 1956 | 100 | 60 / 60 | plus | ABC11714 ABC20187 ABC49802 ABC49803 |
| JLOC1 | JLOC1_2284.2 | 2223 | 8e-25 | 1954 - 2013 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2284.1 | 2466 | 8e-25 | 2197 - 2256 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC49802 | 701 | 3e-25 | 46 - 105 | 100 | 60 / 60 | minus | ABC49802 |
| Harvest21 | ABC20187 | 837 | 1e-23 | 699 - 758 | 98 | 59 / 60 | plus | ABC20187 |
| Harvest35 | U35_48042 | 701 | 3e-25 | 46 - 105 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_23584 | 837 | 1e-23 | 699 - 758 | 98 | 59 / 60 | plus |
Contig Sequence (701 bp)
>U35_48042 701 Hv_44K_v2 GGAATCAAACTCTCTCTTTAAAGAGTACAACTTTTATATGAAATTGTTTCAAAATGAATT TGACGAAACGAAACTGAATTTTATGTAGTGTAGTCCCAAACAGGCCCATTGCCAAGTCAA GGTTACACCACATTTAAAGCTAAGACTATATATGGGAATTGTGCACGAGTGTGTGAGATA GCTCTCGCGAATGGATGGCGATGCGAGCCCCCGATAGGGGTCGGCCGCCCTACTTCCCGG CCCCAAGGCCAGATCCAGCCTTCTCCGCCGCATGCCAAGCTGACGGATCTGGCGCCTCAA TCCAGATCGGCATCGGCGATGCCCCTCGGTGTGAGGCAGCTGGTCGTTGCTGTTACGTCT ACTAGAGTGGTTTTTCGAGTATCCATCGGCTGAACATGGCGAAGCACCTCTCGGGCTCGT ACTCTGGCGCGGTGTGCCCGCCACCCTTGATGGTTGCGAATGTCATGTTGTTGGAGTAGG TTAAGGTGAAGCTGCAAGAAACGCATGCATCAACAAGAATATAGAGTAATTAAGCATGAA AAGGAGTAGCAGTAGCGAGCAACGATGGTGTGTGGGTACCCAGCAGACTGGCCATGGAGA TGCCATGCCCTCCAATGGTGGGCGACGGNGAAGCCAAGTGACCTGATCCACGCCTGTGTC CCCAGGTGCGGCACCAATGCGTCATGGTCGCCGCTGTATAC
Homology of Contig U35_48042 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |